ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Chromosome Search Result

Search by: Chr = chr3

SNP: 584
CNV: 32
Gene: 89
Region: 5

SNP (count: 584)

Literature-origin SNPs (count: 60)

rs_ID	Location	Functional Annotation	No. of Studies (significant/non-significant/trend)
rs6280	Chr3:113890815(Fwd)	missense_variant	2(0/2/0)
rs1354348	Chr3:113906226(Fwd)	intron_variant	1(0/1/0)
rs4686673	Chr3:193861242(Fwd)	downstream_gene_variant; upstream_gene_variant	1(1/0/0)
rs2360867	Chr3:143405663(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs2361209	Chr3:143568783(Fwd)	upstream_gene_variant	1(1/0/0)
rs237885	Chr3:8795543(Fwd)	intron_variant; nc_transcript_variant	1(0/1/0)
rs237895	Chr3:8807423(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant	1(0/1/0)
rs10490827	Chr3:144271458(Fwd)		1(0/0/1)
rs1503433	Chr3:88037200(Fwd)	upstream_gene_variant	1(1/0/0)
rs10513219	Chr3:143534874(Fwd)	NMD_transcript_variant; intron_variant	1(1/0/0)
rs2601126	Chr3:11036624(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs53576	Chr3:8804371(Fwd)	intron_variant; nc_transcript_variant	1(0/1/0)
rs864643	Chr3:39555580(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	1(0/0/1)
rs167771	Chr3:113876275(Fwd)	intron_variant	1(0/1/0)
rs16855659	Chr3:144301659(Fwd)		1(0/1/0)
rs17023218	Chr3:29342717(Fwd)	intron_variant; nc_transcript_variant	1(0/1/0)
rs1728818	Chr3:11032992(Fwd)	upstream_gene_variant	1(0/1/0)
rs1112189	Chr3:143029589(Fwd)	downstream_gene_variant; intron_variant	1(1/0/0)
rs9810857	Chr3:142982899(Fwd)	downstream_gene_variant	1(0/0/1)
rs9832471	Chr3:143570871(Fwd)	downstream_gene_variant; upstream_gene_variant	1(1/0/0)
rs9842394	Chr3:179613236(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/0/1)
rs9844608	Chr3:33774574(Fwd)		1(0/0/1)
rs324029	Chr3:113881623(Fwd)	intron_variant	1(0/1/0)
rs9848371	Chr3:143014479(Fwd)	intron_variant	1(1/0/0)
rs9850088	Chr3:143567690(Fwd)	upstream_gene_variant	1(1/0/0)
rs9870661	Chr3:143571267(Fwd)	downstream_gene_variant; upstream_gene_variant	1(1/0/0)
rs17574671	Chr3:143029792(Fwd)	downstream_gene_variant; intron_variant	1(1/0/0)
rs9873087	Chr3:143394491(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs17651978	Chr3:71020490(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant	1(0/0/1)
rs36051446	Chr3:61603665(Fwd)	intron_variant; nc_transcript_variant	1(0/0/1)
rs6440161	Chr3:143019984(Fwd)	intron_variant	1(1/0/0)
rs11714060	Chr3:143567207(Fwd)	5_prime_UTR_variant; NMD_transcript_variant; nc_transcript_variant; non_coding_exon_variant	1(1/0/0)
rs11719664	Chr3:21955198(Fwd)	intron_variant; nc_transcript_variant	1(0/0/1)
rs1900633	Chr3:143398098(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs6770632	Chr3:8793724(Fwd)	3_prime_UTR_variant; intron_variant; nc_transcript_variant	1(0/1/0)
rs6791644	Chr3:60771108(Fwd)	intron_variant; nc_transcript_variant	1(0/0/1)
rs6793522	Chr3:143150027(Fwd)	intron_variant	1(1/0/0)
rs6803740	Chr3:32344306(Fwd)	intron_variant	1(1/0/0)
rs6806500	Chr3:143013203(Fwd)	intron_variant	1(1/0/0)
rs6808138	Chr3:161392576(Fwd)		1(0/0/1)
rs1242058	Chr3:143377573(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs1242068	Chr3:143371447(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs1242070	Chr3:143370967(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs1242075	Chr3:143366830(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs1242076	Chr3:143366463(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs12496256	Chr3:32299549(Fwd)	intron_variant; upstream_gene_variant	1(0/1/0)
rs12631326	Chr3:144298314(Fwd)		1(0/1/0)
rs12631899	Chr3:144268855(Fwd)		1(0/1/0)
rs12633370	Chr3:144285575(Fwd)		1(0/0/1)
rs2134655	Chr3:113858201(Fwd)	intron_variant	1(0/1/0)
rs7340679	Chr3:15346700(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant	1(0/0/1)
rs4374483	Chr3:125920064(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)
rs226082	Chr3:113881013(Fwd)	intron_variant	1(0/1/0)
rs13316193	Chr3:8802743(Fwd)	intron_variant; nc_transcript_variant	1(0/1/0)
rs7616384	Chr3:143453195(Fwd)	NMD_transcript_variant; intron_variant	1(1/0/0)
rs7631319	Chr3:143403277(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs7632299	Chr3:143056467(Fwd)	intron_variant; upstream_gene_variant	1(1/0/0)
rs7633167	Chr3:105911539(Fwd)		1(0/1/0)
rs7638876	Chr3:113894300(Fwd)	intron_variant	1(1/0/0)
rs7645681	Chr3:143568154(Fwd)	upstream_gene_variant	1(1/0/0)

LD-proxies (count: 524)

rs_ID	Location	Functional Annotation
rs7616429	Chr3:144210782(Fwd)
rs7611785	Chr3:144213414(Fwd)
rs10935507	Chr3:144214631(Fwd)
rs9840395	Chr3:144216555(Fwd)
rs4681125	Chr3:144217943(Fwd)
rs4681342	Chr3:144218146(Fwd)
rs9878902	Chr3:144220319(Fwd)
rs1710873	Chr3:11032829(Fwd)	upstream_gene_variant
rs7634647	Chr3:144222182(Fwd)
rs2675156	Chr3:11033828(Fwd)	upstream_gene_variant
rs12490666	Chr3:144225645(Fwd)
rs2697148	Chr3:11036580(Fwd)	intron_variant; nc_transcript_variant
rs1949954	Chr3:144227977(Fwd)
rs1710898	Chr3:11037760(Fwd)	intron_variant; nc_transcript_variant
rs7614950	Chr3:144229591(Fwd)
rs1728816	Chr3:11037778(Fwd)	intron_variant; nc_transcript_variant
rs13066453	Chr3:144230931(Fwd)
rs13325776	Chr3:11021064(Fwd)
rs4479640	Chr3:144231280(Fwd)
rs2697150	Chr3:11036150(Fwd)	intron_variant; nc_transcript_variant
rs4839670	Chr3:143547182(Fwd)	NMD_transcript_variant; intron_variant
rs1657010	Chr3:144242847(Fwd)
rs2697149	Chr3:11036480(Fwd)	intron_variant; nc_transcript_variant
rs2361204	Chr3:143553693(Fwd)	NMD_transcript_variant; intron_variant
rs1726536	Chr3:144249504(Fwd)
rs6764661	Chr3:143572786(Fwd)	downstream_gene_variant
rs1726522	Chr3:144253391(Fwd)
rs12497227	Chr3:143560530(Fwd)	NMD_transcript_variant; intron_variant
rs2717380	Chr3:144256908(Fwd)
rs6776336	Chr3:143573252(Fwd)	downstream_gene_variant
rs2575184	Chr3:144262193(Fwd)
rs10433437	Chr3:143573612(Fwd)	downstream_gene_variant
rs2575189	Chr3:144275319(Fwd)
rs1394403	Chr3:143575350(Fwd)	upstream_gene_variant
rs2717389	Chr3:144277333(Fwd)
rs324026	Chr3:113891042(Fwd)	intron_variant
rs4839613	Chr3:143576229(Fwd)	upstream_gene_variant
rs7613909	Chr3:144308606(Fwd)
rs7638961	Chr3:113894394(Fwd)	intron_variant
rs4839614	Chr3:143576347(Fwd)	upstream_gene_variant
rs9882503	Chr3:144321296(Fwd)
rs11721264	Chr3:113879404(Fwd)	intron_variant
rs6765414	Chr3:143576748(Fwd)	upstream_gene_variant
rs1405599	Chr3:144328759(Fwd)
rs167770	Chr3:113879562(Fwd)	intron_variant
rs6763660	Chr3:143534134(Fwd)	NMD_transcript_variant; intron_variant
rs2118001	Chr3:144336609(Fwd)
rs324030	Chr3:113881441(Fwd)	intron_variant
rs4839659	Chr3:143535017(Fwd)	NMD_transcript_variant; intron_variant
rs800081	Chr3:144339980(Fwd)
rs7625282	Chr3:113881527(Fwd)	intron_variant
rs4839660	Chr3:143535027(Fwd)	NMD_transcript_variant; intron_variant
rs1164316	Chr3:144343866(Fwd)
rs324022	Chr3:113887298(Fwd)	intron_variant
rs4839661	Chr3:143535063(Fwd)	NMD_transcript_variant; intron_variant
rs6798102	Chr3:113930447(Fwd)	upstream_gene_variant
rs4839663	Chr3:143535238(Fwd)	NMD_transcript_variant; intron_variant
rs6798215	Chr3:113930562(Fwd)	upstream_gene_variant
rs6792031	Chr3:143535265(Fwd)	NMD_transcript_variant; intron_variant
rs10934256	Chr3:113885652(Fwd)	intron_variant
rs6769847	Chr3:143535544(Fwd)	NMD_transcript_variant; intron_variant
rs7633291	Chr3:113887068(Fwd)	intron_variant
rs2361199	Chr3:143538156(Fwd)	NMD_transcript_variant; intron_variant
rs1800828	Chr3:113891549(Fwd)	intron_variant
rs1823220	Chr3:143539799(Fwd)	NMD_transcript_variant; intron_variant
rs9825563	Chr3:113900220(Fwd)	intron_variant; upstream_gene_variant
rs6804065	Chr3:143543766(Fwd)	NMD_transcript_variant; intron_variant
rs6801068	Chr3:113910116(Fwd)	intron_variant
rs7651412	Chr3:143545256(Fwd)	NMD_transcript_variant; intron_variant
rs6762200	Chr3:113918633(Fwd)	upstream_gene_variant
rs7621206	Chr3:143545596(Fwd)	NMD_transcript_variant; intron_variant
rs7616367	Chr3:113937999(Fwd)	intron_variant; nc_transcript_variant
rs9847107	Chr3:143545699(Fwd)	NMD_transcript_variant; intron_variant
rs7629232	Chr3:113901818(Fwd)	intron_variant; upstream_gene_variant
rs9827103	Chr3:143545730(Fwd)	NMD_transcript_variant; intron_variant
rs1587757	Chr3:113902835(Fwd)	intron_variant; upstream_gene_variant
rs16854417	Chr3:143545762(Fwd)	NMD_transcript_variant; intron_variant
rs9880494	Chr3:113903791(Fwd)	intron_variant
rs16854421	Chr3:143545873(Fwd)	NMD_transcript_variant; intron_variant
rs324035	Chr3:113868854(Fwd)	intron_variant
rs1394016	Chr3:113909889(Fwd)	intron_variant
rs16854423	Chr3:143546559(Fwd)	NMD_transcript_variant; intron_variant
rs324036	Chr3:113867862(Fwd)	intron_variant
rs7631639	Chr3:113911226(Fwd)	intron_variant
rs16854424	Chr3:143546899(Fwd)	NMD_transcript_variant; intron_variant
rs3773678	Chr3:113870078(Fwd)	intron_variant
rs7628806	Chr3:113917835(Fwd)	intron_variant
rs1900643	Chr3:143547272(Fwd)	NMD_transcript_variant; intron_variant
rs999661	Chr3:113932608(Fwd)	upstream_gene_variant
rs1989180	Chr3:143549639(Fwd)	NMD_transcript_variant; intron_variant
rs1109238	Chr3:113933675(Fwd)	intron_variant; nc_transcript_variant
rs7652644	Chr3:143557651(Fwd)	NMD_transcript_variant; intron_variant
rs1109239	Chr3:113933975(Fwd)	intron_variant; nc_transcript_variant
rs16854463	Chr3:143559670(Fwd)	NMD_transcript_variant; intron_variant
rs2361207	Chr3:143557506(Fwd)	NMD_transcript_variant; intron_variant
rs7610054	Chr3:113935873(Fwd)	intron_variant; nc_transcript_variant
rs16854493	Chr3:143567923(Fwd)	upstream_gene_variant
rs1319100	Chr3:143569697(Fwd)	downstream_gene_variant; upstream_gene_variant
rs2399504	Chr3:113938235(Fwd)	intron_variant; nc_transcript_variant
rs16854503	Chr3:143571147(Fwd)	downstream_gene_variant; upstream_gene_variant
rs17574746	Chr3:143032500(Fwd)	intron_variant; nc_transcript_variant
rs1979911	Chr3:143572074(Fwd)	downstream_gene_variant; upstream_gene_variant
rs10511328	Chr3:113943200(Fwd)	intron_variant; nc_transcript_variant
rs16854525	Chr3:143574680(Fwd)	nc_transcript_variant; non_coding_exon_variant
rs17636943	Chr3:143037998(Fwd)	intron_variant; upstream_gene_variant
rs4839671	Chr3:143551822(Fwd)	NMD_transcript_variant; intron_variant
rs12639542	Chr3:113944307(Fwd)	intron_variant; nc_transcript_variant
rs10513225	Chr3:143582332(Fwd)
rs6799793	Chr3:143041170(Fwd)	intron_variant
rs4839672	Chr3:143551893(Fwd)	NMD_transcript_variant; intron_variant
rs16854573	Chr3:143582356(Fwd)
rs12488603	Chr3:143044440(Fwd)	intron_variant
rs4839612	Chr3:143551908(Fwd)	NMD_transcript_variant; intron_variant
rs10513226	Chr3:143582463(Fwd)
rs6768217	Chr3:143046193(Fwd)	intron_variant
rs2885193	Chr3:143552202(Fwd)	NMD_transcript_variant; intron_variant
rs16854588	Chr3:143588335(Fwd)
rs6796961	Chr3:143025851(Fwd)	intron_variant
rs2361202	Chr3:143552367(Fwd)	NMD_transcript_variant; intron_variant
rs6775184	Chr3:143585263(Fwd)
rs17637467	Chr3:143048457(Fwd)	intron_variant
rs6440195	Chr3:143552761(Fwd)	NMD_transcript_variant; intron_variant
rs16854607	Chr3:143600997(Fwd)
rs6440196	Chr3:143552879(Fwd)	NMD_transcript_variant; intron_variant
rs3774245	Chr3:179598716(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant
rs2885194	Chr3:143553617(Fwd)	NMD_transcript_variant; intron_variant
rs2302741	Chr3:179605294(Fwd)	intron_variant; nc_transcript_variant
rs4286430	Chr3:143554455(Fwd)	NMD_transcript_variant; intron_variant
rs940523	Chr3:179621954(Fwd)	intron_variant; nc_transcript_variant
rs2361206	Chr3:143557290(Fwd)	NMD_transcript_variant; intron_variant
rs9836757	Chr3:179642221(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs7629598	Chr3:143562685(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant
rs2339914	Chr3:179592240(Fwd)	downstream_gene_variant; intron_variant; upstream_gene_variant
rs1394398	Chr3:143563113(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant
rs2302743	Chr3:179593352(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs1995529	Chr3:143564093(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant
rs11131149	Chr3:8802851(Fwd)	intron_variant; nc_transcript_variant
rs17748864	Chr3:179649511(Fwd)	intron_variant; nc_transcript_variant
rs1995530	Chr3:143564166(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant
rs2268492	Chr3:8800672(Fwd)	intron_variant; nc_transcript_variant
rs4146789	Chr3:179656495(Fwd)	intron_variant; nc_transcript_variant
rs9824974	Chr3:143564776(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant
rs2268493	Chr3:8800840(Fwd)	intron_variant; nc_transcript_variant
rs16830940	Chr3:179658262(Fwd)	intron_variant; nc_transcript_variant
rs4499594	Chr3:143568176(Fwd)	upstream_gene_variant
rs7630877	Chr3:179661318(Fwd)	intron_variant; nc_transcript_variant
rs2885195	Chr3:143568223(Fwd)	upstream_gene_variant
rs9817358	Chr3:33630663(Fwd)	intron_variant; upstream_gene_variant
rs2361208	Chr3:143568467(Fwd)	upstream_gene_variant
rs9856967	Chr3:33648715(Fwd)	downstream_gene_variant; intron_variant
rs1319101	Chr3:143569790(Fwd)	downstream_gene_variant; upstream_gene_variant
rs7624319	Chr3:33737093(Fwd)	intron_variant; nc_transcript_variant
rs10433436	Chr3:143573548(Fwd)	downstream_gene_variant
rs9840630	Chr3:33740736(Fwd)	intron_variant; nc_transcript_variant
rs2011290	Chr3:143574317(Fwd)	downstream_gene_variant
rs4513404	Chr3:33785613(Fwd)
rs6780027	Chr3:143574386(Fwd)	downstream_gene_variant
rs9839042	Chr3:33745827(Fwd)	intron_variant; nc_transcript_variant
rs6768702	Chr3:143574439(Fwd)	downstream_gene_variant
rs4328759	Chr3:33602907(Fwd)	intron_variant; upstream_gene_variant
rs2221412	Chr3:143574494(Fwd)	downstream_gene_variant
rs7643855	Chr3:33605300(Fwd)	intron_variant; upstream_gene_variant
rs6782974	Chr3:143574901(Fwd)	nc_transcript_variant; non_coding_exon_variant
rs6774696	Chr3:33608875(Fwd)	downstream_gene_variant; intron_variant
rs9289669	Chr3:143575195(Fwd)	upstream_gene_variant
rs6550225	Chr3:33616881(Fwd)	intron_variant; nc_transcript_variant
rs1394402	Chr3:143575546(Fwd)	upstream_gene_variant
rs9867080	Chr3:33620305(Fwd)	intron_variant; upstream_gene_variant
rs4839674	Chr3:143577515(Fwd)	upstream_gene_variant
rs581691	Chr3:39550735(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs9311020	Chr3:33636869(Fwd)	intron_variant
rs6440200	Chr3:143583002(Fwd)
rs1768262	Chr3:39553276(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs6807732	Chr3:33653803(Fwd)	intron_variant
rs9822158	Chr3:143539008(Fwd)	NMD_transcript_variant; intron_variant
rs816491	Chr3:39555497(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs9809240	Chr3:33665652(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs9841753	Chr3:143702978(Fwd)	intron_variant; nc_transcript_variant
rs816492	Chr3:39556155(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs9853831	Chr3:33693794(Fwd)	intron_variant; nc_transcript_variant
rs1486392	Chr3:21957750(Fwd)	intron_variant; nc_transcript_variant
rs704962	Chr3:39557120(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs9847845	Chr3:33699640(Fwd)	intron_variant; nc_transcript_variant
rs17010135	Chr3:21959351(Fwd)	intron_variant; nc_transcript_variant
rs572971	Chr3:39561427(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs4450748	Chr3:33711482(Fwd)	intron_variant
rs1813534	Chr3:21963975(Fwd)	intron_variant; nc_transcript_variant
rs634338	Chr3:39564243(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs6770784	Chr3:33734606(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs11714027	Chr3:21981674(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs1768127	Chr3:39565281(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs7641020	Chr3:33751018(Fwd)	intron_variant; nc_transcript_variant
rs12492135	Chr3:21990703(Fwd)	intron_variant; nc_transcript_variant
rs587054	Chr3:39565987(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant
rs4437091	Chr3:33756889(Fwd)	intron_variant; nc_transcript_variant
rs11714758	Chr3:21998153(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs12714696	Chr3:88032327(Fwd)
rs505176	Chr3:39566348(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant
rs4287875	Chr3:33763296(Fwd)	upstream_gene_variant
rs12490009	Chr3:22000946(Fwd)	intron_variant; nc_transcript_variant
rs9863076	Chr3:88033939(Fwd)
rs1708001	Chr3:39567205(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant
rs6781846	Chr3:33786741(Fwd)
rs2099229	Chr3:88029064(Fwd)
rs2542	Chr3:39567349(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant
rs9858415	Chr3:33789382(Fwd)
rs6770013	Chr3:88031698(Fwd)
rs561543	Chr3:39536407(Fwd)	NMD_transcript_variant; intron_variant
rs7638065	Chr3:33794086(Fwd)
rs7630716	Chr3:88033471(Fwd)
rs1708032	Chr3:39539133(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs4549233	Chr3:33798207(Fwd)
rs2016224	Chr3:88041650(Fwd)	3_prime_UTR_variant
rs538972	Chr3:39539143(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs3934853	Chr3:33801024(Fwd)
rs7629565	Chr3:88044780(Fwd)	downstream_gene_variant
rs614359	Chr3:39539526(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs4402882	Chr3:33801280(Fwd)
rs7652406	Chr3:88053238(Fwd)
rs1768237	Chr3:39540203(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs9311026	Chr3:33805561(Fwd)
rs6794755	Chr3:143535626(Fwd)	NMD_transcript_variant; intron_variant
rs17025241	Chr3:88053396(Fwd)
rs482495	Chr3:39540415(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs12106734	Chr3:33600112(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant
rs6773298	Chr3:143536512(Fwd)	NMD_transcript_variant; intron_variant
rs13074576	Chr3:88054792(Fwd)
rs645457	Chr3:39540497(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs9849641	Chr3:33613376(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs6798159	Chr3:143536804(Fwd)	NMD_transcript_variant; intron_variant
rs1835543	Chr3:88058387(Fwd)
rs645488	Chr3:39540519(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs4679073	Chr3:33689633(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs11710427	Chr3:143537107(Fwd)	NMD_transcript_variant; intron_variant
rs6781901	Chr3:88062542(Fwd)
rs1417147	Chr3:39540727(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs6550229	Chr3:33732592(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs11917152	Chr3:143539127(Fwd)	NMD_transcript_variant; intron_variant
rs4858975	Chr3:88062791(Fwd)
rs1708057	Chr3:39541386(Fwd)	5_prime_UTR_variant; NMD_transcript_variant; intron_variant; upstream_gene_variant
rs9830766	Chr3:33767005(Fwd)	downstream_gene_variant
rs2011026	Chr3:143540059(Fwd)	NMD_transcript_variant; intron_variant
rs1431153	Chr3:88063083(Fwd)
rs1768241	Chr3:39541478(Fwd)	5_prime_UTR_variant; NMD_transcript_variant; intron_variant; upstream_gene_variant
rs4678614	Chr3:33767207(Fwd)	downstream_gene_variant
rs11918501	Chr3:143540753(Fwd)	NMD_transcript_variant; intron_variant
rs9310061	Chr3:88063765(Fwd)
rs1708059	Chr3:39541550(Fwd)	NMD_transcript_variant; intron_variant; synonymous_variant; upstream_gene_variant
rs13098051	Chr3:33777893(Fwd)
rs11919227	Chr3:143540868(Fwd)	NMD_transcript_variant; intron_variant
rs9842748	Chr3:88063854(Fwd)
rs1768243	Chr3:39541797(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs9839531	Chr3:33780983(Fwd)
rs6806661	Chr3:143541114(Fwd)	NMD_transcript_variant; intron_variant
rs1469569	Chr3:88076197(Fwd)
rs7616236	Chr3:39542136(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs4566534	Chr3:143391126(Fwd)	intron_variant; nc_transcript_variant
rs2361200	Chr3:143541598(Fwd)	NMD_transcript_variant; intron_variant
rs11717413	Chr3:88078313(Fwd)
rs1473865	Chr3:39542804(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs6775995	Chr3:143397241(Fwd)	intron_variant; nc_transcript_variant
rs7641634	Chr3:143542008(Fwd)	NMD_transcript_variant; intron_variant
rs10511136	Chr3:88080462(Fwd)
rs1708073	Chr3:39543021(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs1823221	Chr3:143544418(Fwd)	NMD_transcript_variant; intron_variant
rs17549345	Chr3:88080579(Fwd)
rs1612165	Chr3:39543487(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs11915058	Chr3:88082883(Fwd)
rs1768252	Chr3:39548259(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs6785333	Chr3:88085633(Fwd)
rs1707968	Chr3:39548405(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs1242066	Chr3:143371967(Fwd)	intron_variant; nc_transcript_variant
rs9880480	Chr3:88086586(Fwd)
rs1768254	Chr3:39548420(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs1242064	Chr3:143372266(Fwd)	intron_variant; nc_transcript_variant
rs9852704	Chr3:88088344(Fwd)
rs1707972	Chr3:39548734(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs9822605	Chr3:143374088(Fwd)	intron_variant; nc_transcript_variant
rs2344185	Chr3:88088676(Fwd)
rs1340222	Chr3:39549803(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs1242061	Chr3:143376489(Fwd)	intron_variant; nc_transcript_variant
rs9859034	Chr3:88089972(Fwd)
rs689352	Chr3:39550766(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs12635131	Chr3:143360568(Fwd)	intron_variant; nc_transcript_variant
rs1946569	Chr3:88019870(Fwd)
rs1707988	Chr3:39551526(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs1242073	Chr3:143369778(Fwd)	intron_variant; nc_transcript_variant
rs17025214	Chr3:88023541(Fwd)
rs1708002	Chr3:39552676(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs1242067	Chr3:143371607(Fwd)	intron_variant; nc_transcript_variant
rs552724	Chr3:39554946(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant
rs1242065	Chr3:143372127(Fwd)	intron_variant; nc_transcript_variant
rs1068953	Chr3:39556561(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs6762408	Chr3:143363222(Fwd)	intron_variant; nc_transcript_variant
rs704963	Chr3:39557238(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs1242074	Chr3:143367503(Fwd)	intron_variant; nc_transcript_variant
rs1513214	Chr3:39560265(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs2360865	Chr3:143407129(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs1768267	Chr3:39560436(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs1242079	Chr3:143364858(Fwd)	intron_variant; nc_transcript_variant
rs4129648	Chr3:39560810(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs16853964	Chr3:143363920(Fwd)	intron_variant; nc_transcript_variant
rs661366	Chr3:39561348(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs13096290	Chr3:113690427(Fwd)	intron_variant
rs574074	Chr3:39561581(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs2029228	Chr3:113659308(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs673426	Chr3:39561777(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs1386478	Chr3:113680951(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant
rs1355733	Chr3:39562656(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs13064466	Chr3:113762574(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs529839	Chr3:39566758(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant
rs13064372	Chr3:113776416(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs1708000	Chr3:39567136(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant
rs2242316	Chr3:113784767(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs602527	Chr3:39568784(Fwd)	downstream_gene_variant
rs13069900	Chr3:113786450(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs816520	Chr3:39569713(Fwd)	downstream_gene_variant
rs13094677	Chr3:113818348(Fwd)	downstream_gene_variant
rs546031	Chr3:39571377(Fwd)	downstream_gene_variant
rs324024	Chr3:113890276(Fwd)	intron_variant
rs569888	Chr3:39571656(Fwd)	downstream_gene_variant
rs946409	Chr3:39573040(Fwd)
rs1708056	Chr3:39573153(Fwd)
rs1615046	Chr3:39573800(Fwd)
rs1615994	Chr3:39573919(Fwd)
rs1768134	Chr3:39574571(Fwd)
rs530080	Chr3:39588998(Fwd)
rs12493231	Chr3:143403750(Fwd)	intron_variant; nc_transcript_variant
rs1631776	Chr3:39590195(Fwd)
rs10935501	Chr3:143407687(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs635235	Chr3:39591105(Fwd)
rs12488445	Chr3:143408723(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs636476	Chr3:39591332(Fwd)
rs6550109	Chr3:32291203(Fwd)	intron_variant
rs12053888	Chr3:143413623(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs1768144	Chr3:39592060(Fwd)
rs1447740	Chr3:143413798(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs1398666	Chr3:39517031(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs10513217	Chr3:143405698(Fwd)	intron_variant; nc_transcript_variant
rs1707956	Chr3:39523516(Fwd)	NMD_transcript_variant; intron_variant
rs1992864	Chr3:143406442(Fwd)	intron_variant; nc_transcript_variant
rs6599028	Chr3:39533835(Fwd)	NMD_transcript_variant; intron_variant
rs4378956	Chr3:143406616(Fwd)	intron_variant; nc_transcript_variant
rs614823	Chr3:39534758(Fwd)	NMD_transcript_variant; intron_variant
rs2028995	Chr3:143407215(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs535878	Chr3:39535884(Fwd)	NMD_transcript_variant; intron_variant
rs7620747	Chr3:143410306(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs535220	Chr3:39538725(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs11712629	Chr3:143410981(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs1708070	Chr3:39542505(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs956063	Chr3:143411080(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs1513218	Chr3:39545588(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs11720752	Chr3:143411583(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs3821372	Chr3:39548371(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs1562496	Chr3:143415475(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs1707987	Chr3:39551493(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs6787434	Chr3:143415657(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs3821373	Chr3:39553776(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs6776693	Chr3:143416272(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs2039843	Chr3:39556838(Fwd)	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs12490934	Chr3:143416735(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs10934756	Chr3:125923385(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs6809442	Chr3:39559157(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs12487959	Chr3:143416818(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs1447662	Chr3:125925268(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs661422	Chr3:39561389(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs12489656	Chr3:143418390(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs4679218	Chr3:125927576(Fwd)	downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant
rs12490768	Chr3:39563365(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs12486254	Chr3:143418401(Fwd)	NMD_transcript_variant; intron_variant; upstream_gene_variant
rs9822040	Chr3:125927761(Fwd)	downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant
rs1606473	Chr3:39582924(Fwd)
rs6776287	Chr3:143415940(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs10804575	Chr3:125928827(Fwd)	downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant
rs11129837	Chr3:39589963(Fwd)
rs237886	Chr3:8795587(Fwd)	intron_variant; nc_transcript_variant
rs11928458	Chr3:125934116(Fwd)
rs11706648	Chr3:8796547(Fwd)	intron_variant; nc_transcript_variant
rs13326951	Chr3:125934702(Fwd)
rs237897	Chr3:8808285(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs9871359	Chr3:125938286(Fwd)
rs9873750	Chr3:125942770(Fwd)
rs6794548	Chr3:143019833(Fwd)	intron_variant
rs6782537	Chr3:125888991(Fwd)	NMD_transcript_variant; intron_variant
rs12695477	Chr3:125913874(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs13093377	Chr3:29338610(Fwd)	intron_variant; nc_transcript_variant
rs13076689	Chr3:29339641(Fwd)	intron_variant; nc_transcript_variant
rs2196550	Chr3:29347180(Fwd)	intron_variant; nc_transcript_variant
rs9882445	Chr3:61613707(Fwd)	intron_variant; nc_transcript_variant
rs1316500	Chr3:61580040(Fwd)	intron_variant; nc_transcript_variant
rs4390919	Chr3:61590181(Fwd)	intron_variant; nc_transcript_variant
rs1320234	Chr3:61615565(Fwd)	intron_variant; nc_transcript_variant
rs4688644	Chr3:61620749(Fwd)	intron_variant; nc_transcript_variant
rs4688261	Chr3:61620775(Fwd)	intron_variant; nc_transcript_variant
rs4688646	Chr3:61624771(Fwd)	intron_variant; nc_transcript_variant
rs16854224	Chr3:143455010(Fwd)	NMD_transcript_variant; intron_variant
rs9881520	Chr3:61626426(Fwd)	intron_variant; nc_transcript_variant
rs17650950	Chr3:143446436(Fwd)	NMD_transcript_variant; intron_variant
rs9856190	Chr3:144288547(Fwd)
rs1996520	Chr3:61617685(Fwd)	intron_variant; nc_transcript_variant
rs17651016	Chr3:143450272(Fwd)	NMD_transcript_variant; intron_variant
rs12635919	Chr3:61609594(Fwd)	intron_variant; nc_transcript_variant
rs16854227	Chr3:143456935(Fwd)	NMD_transcript_variant; intron_variant
rs12489977	Chr3:61630014(Fwd)	intron_variant; nc_transcript_variant
rs17651124	Chr3:143461849(Fwd)	NMD_transcript_variant; intron_variant
rs17651150	Chr3:143461957(Fwd)	NMD_transcript_variant; intron_variant
rs11916022	Chr3:8781331(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs2069040	Chr3:143463487(Fwd)	NMD_transcript_variant; intron_variant
rs6777088	Chr3:8786487(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs17651169	Chr3:143463838(Fwd)	NMD_transcript_variant; intron_variant
rs6777678	Chr3:8787061(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs17591646	Chr3:143464437(Fwd)	NMD_transcript_variant; intron_variant
rs13087941	Chr3:8787220(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; synonymous_variant; upstream_gene_variant
rs17591660	Chr3:143464593(Fwd)	NMD_transcript_variant; intron_variant
rs17297971	Chr3:8790164(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs10935489	Chr3:143057833(Fwd)	intron_variant; upstream_gene_variant
rs7632287	Chr3:8791446(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs1393071	Chr3:143049856(Fwd)	intron_variant
rs2324728	Chr3:8792728(Fwd)	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant
rs9332458	Chr3:143050502(Fwd)	intron_variant
rs237884	Chr3:8793585(Fwd)	3_prime_UTR_variant; intron_variant; nc_transcript_variant
rs6440163	Chr3:143051850(Fwd)	intron_variant
rs17680697	Chr3:60759742(Fwd)	intron_variant; nc_transcript_variant
rs12493355	Chr3:143056787(Fwd)	intron_variant; upstream_gene_variant
rs12491786	Chr3:60762575(Fwd)	intron_variant; nc_transcript_variant
rs10804691	Chr3:143062127(Fwd)	intron_variant; nc_transcript_variant
rs12492901	Chr3:60767452(Fwd)	intron_variant; nc_transcript_variant
rs7652901	Chr3:143064866(Fwd)	intron_variant; nc_transcript_variant
rs6794160	Chr3:60771321(Fwd)	intron_variant; nc_transcript_variant
rs10446325	Chr3:143068463(Fwd)	downstream_gene_variant; intron_variant
rs17063990	Chr3:60771914(Fwd)	intron_variant; nc_transcript_variant
rs1550547	Chr3:143040746(Fwd)	intron_variant
rs1014856	Chr3:60774117(Fwd)	intron_variant; nc_transcript_variant
rs10935488	Chr3:143046973(Fwd)	intron_variant
rs3196715	Chr3:179619860(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant
rs4974241	Chr3:60775460(Fwd)	intron_variant; nc_transcript_variant
rs16853428	Chr3:143047299(Fwd)	intron_variant
rs6778623	Chr3:113919716(Fwd)	upstream_gene_variant
rs12492010	Chr3:60777932(Fwd)	intron_variant; nc_transcript_variant
rs11915857	Chr3:143047698(Fwd)	intron_variant
rs16822478	Chr3:113936740(Fwd)	intron_variant; nc_transcript_variant
rs1447927	Chr3:60787599(Fwd)	intron_variant; nc_transcript_variant
rs6440164	Chr3:143052348(Fwd)	intron_variant
rs10934253	Chr3:113837784(Fwd)
rs4974228	Chr3:60763597(Fwd)	intron_variant; nc_transcript_variant
rs968587	Chr3:143052601(Fwd)	intron_variant
rs9682405	Chr3:113838089(Fwd)
rs12152479	Chr3:32334209(Fwd)	intron_variant
rs968586	Chr3:143052694(Fwd)	intron_variant
rs6808291	Chr3:113838590(Fwd)
rs6780002	Chr3:32344605(Fwd)	intron_variant
rs2352725	Chr3:143054341(Fwd)	intron_variant
rs3732791	Chr3:113847689(Fwd)	synonymous_variant
rs12485470	Chr3:32349801(Fwd)	intron_variant
rs2883015	Chr3:143055646(Fwd)	intron_variant
rs9824856	Chr3:113852731(Fwd)	intron_variant
rs7637149	Chr3:142988413(Fwd)	intron_variant
rs729511	Chr3:143055707(Fwd)	intron_variant
rs9288991	Chr3:113855761(Fwd)	intron_variant
rs7651367	Chr3:142988745(Fwd)	intron_variant
rs10804689	Chr3:143057379(Fwd)	intron_variant; upstream_gene_variant
rs2654754	Chr3:113855796(Fwd)	intron_variant
rs4839676	Chr3:142989146(Fwd)	intron_variant
rs10804690	Chr3:143057451(Fwd)	intron_variant; upstream_gene_variant
rs9859762	Chr3:113857118(Fwd)	intron_variant
rs920572	Chr3:142989332(Fwd)	intron_variant
rs6806677	Chr3:143058663(Fwd)	intron_variant; upstream_gene_variant
rs16822393	Chr3:113880491(Fwd)	intron_variant
rs7620673	Chr3:142989931(Fwd)	intron_variant
rs6769555	Chr3:143058731(Fwd)	intron_variant; upstream_gene_variant
rs1486008	Chr3:113888441(Fwd)	intron_variant
rs7641350	Chr3:142991226(Fwd)	intron_variant
rs2165518	Chr3:143058858(Fwd)	intron_variant; upstream_gene_variant
rs3732783	Chr3:113890789(Fwd)	synonymous_variant
rs1827339	Chr3:142993387(Fwd)	intron_variant
rs1501629	Chr3:143059952(Fwd)	intron_variant; upstream_gene_variant
rs9813633	Chr3:113908226(Fwd)	intron_variant
rs9857170	Chr3:142995443(Fwd)	intron_variant
rs1501628	Chr3:143060272(Fwd)	intron_variant; upstream_gene_variant
rs3796250	Chr3:113933569(Fwd)	intron_variant; nc_transcript_variant
rs6770294	Chr3:143012854(Fwd)	intron_variant
rs1837784	Chr3:143060901(Fwd)	intron_variant; upstream_gene_variant
rs6781661	Chr3:113989480(Fwd)
rs16853354	Chr3:143009210(Fwd)	intron_variant
rs13087723	Chr3:143068818(Fwd)	downstream_gene_variant; intron_variant
rs4682534	Chr3:114034098(Fwd)	downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant
rs16833083	Chr3:161380087(Fwd)
rs963885	Chr3:143037982(Fwd)	intron_variant; upstream_gene_variant
rs2654763	Chr3:114043124(Fwd)
rs9863808	Chr3:161393049(Fwd)
rs12633063	Chr3:143038885(Fwd)	intron_variant
rs10934262	Chr3:114043692(Fwd)
rs6773885	Chr3:161387883(Fwd)
rs12497580	Chr3:114049651(Fwd)
rs12638693	Chr3:144285719(Fwd)
rs10934265	Chr3:114049770(Fwd)
rs6768674	Chr3:193864062(Fwd)	downstream_gene_variant
rs1079513	Chr3:144285901(Fwd)
rs12485249	Chr3:114055345(Fwd)	downstream_gene_variant
rs2368048	Chr3:193854961(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant
rs1036439	Chr3:144295387(Fwd)
rs12488658	Chr3:114055430(Fwd)	downstream_gene_variant
rs4687525	Chr3:193863808(Fwd)	downstream_gene_variant
rs4388021	Chr3:144306086(Fwd)
rs10934268	Chr3:114060961(Fwd)	intron_variant; nc_transcript_variant
rs6805836	Chr3:193864097(Fwd)	downstream_gene_variant
rs16855735	Chr3:144324704(Fwd)
rs12491518	Chr3:114061890(Fwd)	intron_variant; nc_transcript_variant
rs4687526	Chr3:193867433(Fwd)	downstream_gene_variant
rs4618255	Chr3:144198658(Fwd)
rs12493360	Chr3:114063978(Fwd)	intron_variant; nc_transcript_variant
rs9849896	Chr3:144199351(Fwd)
rs12496741	Chr3:114064048(Fwd)	intron_variant; nc_transcript_variant
rs9844730	Chr3:144216886(Fwd)
rs12496777	Chr3:114066149(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs4681126	Chr3:144218081(Fwd)
rs9866442	Chr3:144221195(Fwd)
rs10490826	Chr3:144262510(Fwd)
rs12637065	Chr3:144265840(Fwd)
rs7630402	Chr3:144266585(Fwd)
rs12632855	Chr3:144270750(Fwd)
rs7615146	Chr3:144201750(Fwd)
rs9833354	Chr3:144203082(Fwd)
rs7653820	Chr3:144207354(Fwd)

CNV (count: 32)

ID	Band	Size	Type	Inheritance	Related Genes
CNV_Elia[2010]_23	3p24.1	115762	Duplication	Maternal	GADL1
CNV_Elia[2010]_24	3p26.1	13284	Deletion (hemizygous)	Paternal	GRM7
CNV_Elia[2010]_25	3p26.3	48275	Deletion (hemizygous)	Paternal	CNTN6
CNV_Elia[2010]_26	3p26.3	196042	Duplication	Maternal	CNTN6
CNV_Elia[2010]_27	3p26.3	17178	Deletion (hemizygous)	Paternal
CNV_Elia[2010]_28	3q26.31	127313	Deletion (hemizygous)	Paternal	NAALADL2
CNV_Elia[2010]_29	3q26.31	170734	Deletion (hemizygous)	Maternal	NAALADL2
CNV_Elia[2010]_30	3q26.1	50605	Deletion (hemizygous)	Paternal
CNV_Elia[2010]_31	3q26.1	635180	Duplication	Maternal	PDCD10 SERPINI1 SERPINI2 WDR49 ZBBX
CNV_Elia[2010]_32	3q13.32	41714	Deletion (hemizygous)	Paternal	B4GALT4 UPK1B
CNV_Elia[2010]_33	3q13.32	41714	Deletion (hemizygous)	Paternal	B4GALT4 UPK1B
CNV_Elia[2010]_34	3p12.2	653068	Duplication	Paternal
CNV_Elia[2010]_35	3p26.3	1080014	Duplication	Paternal	CHL1 CNTN6
CNV_Elia[2010]_36	3p26.3	145541	Duplication	Maternal
CNV_Elia[2010]_37	3p22.1	75885	Deletion (hemizygous)	Paternal
CNV_Elia[2010]_38	3q12.1	889166	Duplication	Paternal	COL8A1 DCBLD2
CNV_Lesch[2011]_1	3q26.1	1951305	Deletion	De novo	BCHE PDCD10 SERPINI2 WDR49 ZBBX
CNV_Williams[2010]_1	3q11.2	2344145	Gain	Maternal	EPHA6 MTRNR2L12 RPL18AP8 RPS18P6
CNV_Williams[2010]_9	3p26.2	922518	Gain	Maternal	ITPR1 SETMAR SUMF1
CNV_Williams[2010]_10	3p26.3	1017195	Gain		CNTN4 CNTN6
CNV_Williams[2010]_14	3p26.3	552285	Gain		CNTN6
CNV_Williams[2010]_15	3p26.3-3p26.2	1538470	Loss		CNTN4 CRBN IL5RA LRRN1 MRPS10P2 SETMAR SUMF1 TRNT1
CNV_Williams[2010]_19	3q26.31	1468793	Gain		NLGN1
CNV_Williams[2010]_38	3q26.1	1574775	Loss		C3orf57 NMD3 OTOL1
CNV_Williams[2010]_50	3q29	741671	Gain		ATP13A4 HES1 OPA1
CNV_Williams[2010]_55	3p26.3	561301	Gain		CNTN6
CNV_Elia[2012]_3	3p26.1	13284	Del	0:2:0(100%)	GRM7
CNV_Elia[2012]_10	3p26.3	15722	Del	2:4:0(100%)	CNTN4
CNV_Jarick[2012]_6	3p26.3	1063962	del		CHL1 RPS8P6
CNV_Jarick[2012]_7	3p26.3	898395	del		CNTN6
CNV_Jarick[2012]_8	3q23	658644	dup		CLSTN2 NMNAT3
CNV_Jarick[2012]_9	3q26.31	656205	del		NAALADL2 UBE2V1P2

Gene (count: 89)

Literature-origin genes (count: 19)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DRD3	dopamine receptor D3	3q13.3	8(1/7/0)
SLC9A9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	3q23-q24	2(2/0/0)
CLASP2	cytoplasmic linker associated protein 2	3p24.3	1(0/0/1)
GSK3B	glycogen synthase kinase 3 beta	3q13.3	1(1/0/0)
FOXP1	forkhead box P1	3p14.1	1(0/0/1)
SH3BP5	SH3-domain binding protein 5 (BTK-associated)	3p24.3	1(0/0/1)
CNTN4	contactin 4	3p26.3	1(1/0/0)
GRM7	glutamate receptor, metabotropic 7	3p26-p25	1(1/0/0)
ZBBX	zinc finger, B-box domain containing	3q26.1	1(0/0/1)
HES1	hairy and enhancer of split 1, (Drosophila)	3q28-q29	1(1/0/0)
CMTM8	CKLF-like MARVEL transmembrane domain containing 8	3p22.2	1(1/0/0)
FHIT	fragile histidine triad gene	3p14.2	1(0/0/1)
HTR1F	5-hydroxytryptamine (serotonin) receptor 1F	3p12	1(0/1/0)
MOBP	myelin-associated oligodendrocyte basic protein	3p21.33	1(0/0/1)
OXTR	oxytocin receptor	3p25	1(0/1/0)
PEX5L	peroxisomal biogenesis factor 5-like	3q27.1	1(0/0/1)
PTPRG	protein tyrosine phosphatase, receptor type, G	3p21-p14	1(0/0/1)
RBMS3	RNA binding motif, single stranded interacting protein 3	3p24-p23	1(0/1/0)
SLC6A1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	3p25-p24	1(0/1/0)

Genes from other sources (count: 70)

Approved Symbol	Approved Name	Location
ZBTB20	zinc finger and BTB domain containing 20	3q13.2
ZBTB20-AS1	ZBTB20 antisense RNA 1	3q13.31
ZDHHC23	zinc finger, DHHC-type containing 23	3q13.31
C3orf32	chromosome 3 open reading frame 32	3p25.3
C3orf58	chromosome 3 open reading frame 58	3q24
ZNF385D-AS2	ZNF385D antisense RNA 2	3
PLA1A	phospholipase A1 member A	3q13.13-q13.2
ALDH1L1	aldehyde dehydrogenase 1 family, member L1	3q21.2
CAV3	caveolin 3	3p25
PLCD1	phospholipase C, delta 1	3p22-p21.3
PLCH1	phospholipase C, eta 1	3q25
PLD1	phospholipase D1, phosphatidylcholine-specific	3q26
GADL1	glutamate decarboxylase-like 1	3p23-p22
OTOL1	otolin 1	3q26.1
PDCD10	programmed cell death 10	3q26.1
SEC22A	SEC22 vesicle trafficking protein homolog A (S. cerevisiae)	3q21.1
SEC22C	SEC22 vesicle trafficking protein homolog C (S. cerevisiae)	3p24.3-p22.1
PEX5L-AS2	PEX5L antisense RNA 2	3
GRAMD1C	GRAM domain containing 1C	3q13.31
ATP13A4	ATPase type 13A4	3q29
RPS17P10	ribosomal protein S17 pseudogene 10	3q24
B4GALT4	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4	3q13.3
BCHE	butyrylcholinesterase	3q26.1-q26.2
SLC9A9-AS1	SLC9A9 antisense RNA 1	3q24
TRNT1	tRNA nucleotidyl transferase, CCA-adding, 1	3p25.1
IL5RA	interleukin 5 receptor, alpha	3p26-p24
UBE2V1P2	ubiquitin-conjugating enzyme E2 variant 1 pseudogene 2	3q26.31
KIAA1407	KIAA1407	3q13.31
TRPC1	transient receptor potential cation channel, subfamily C, member 1	3q23
UPK1B	uroplakin 1B	3q13.32
ZNF385D	zinc finger protein 385D	3p24.3
ITPR1	inositol 1,4,5-trisphosphate receptor, type 1	3p26.1
WDR49	WD repeat domain 49	3q26.1
MIR568	microRNA 568	3
C3orf57	chromosome 3 open reading frame 57	3q26.1
LRRN1	leucine rich repeat neuronal 1	3p26.2
RPL18AP8	ribosomal protein L18a pseudogene 8	3q11.2
KRT18P15	keratin 18 pseudogene 15	3p22.3
RPL14	ribosomal protein L14	3p22-p21.2
AADAC	arylacetamide deacetylase (esterase)	3q21.3-q25.2
RPS18P6	ribosomal protein S18 pseudogene 6	3
PEX5L-AS1	PEX5L antisense RNA 1	3
CACNA1D	calcium channel, voltage-dependent, L type, alpha 1D subunit	3p14.3
RPS8P6	ribosomal protein S8 pseudogene 6	3p26.1
QTRTD1	queuine tRNA-ribosyltransferase domain containing 1	3q13.31
CHL1	cell adhesion molecule with homology to L1CAM (close homolog of L1)	3p26
MRPS10P2	mitochondrial ribosomal protein S10 pseudogene 2	3p26
CLSTN2	calsyntenin 2	3q23
MTRNR2L12	MT-RNR2-like 12 (pseudogene)	3q11.2
CASR	calcium-sensing receptor	3q21.1
CCR5	chemokine (C-C motif) receptor 5	3p21
CNTN6	contactin 6	3p26-p25
COL8A1	collagen, type VIII, alpha 1	3q11.1-q13.2
NAALADL2	N-acetylated alpha-linked acidic dipeptidase-like 2	3q26.3
CRBN	cereblon	3p26.3
SERPINI1	serpin peptidase inhibitor, clade I (neuroserpin), member 1	3q26
COPB2	coatomer protein complex, subunit beta 2 (beta prime)	3q23
SERPINI2	serpin peptidase inhibitor, clade I (pancpin), member 2	3q26
SETMAR	SET domain and mariner transposase fusion gene	3p26.2
DCBLD2	discoidin, CUB and LCCL domain containing 2	3q12.2
NLGN1	neuroligin 1	3q26.32
NMD3	NMD3 homolog (S. cerevisiae)	3q26.1
NMNAT3	nicotinamide nucleotide adenylyltransferase 3	3q23
OPA1	optic atrophy 1 (autosomal dominant)	3q28-q29
SSUH2	ssu-2 homolog (C. elegans)	3p26.1
TIGIT	T cell immunoreceptor with Ig and ITIM domains	3q13.31
MGLL	monoglyceride lipase	3p13-q13.33
SUMF1	sulfatase modifying factor 1	3p26.1
EPHA6	EPH receptor A6	3q12.1
NCK1	NCK adaptor protein 1	3q21

Region (count: 5)

Region Name	Location	No. of Studies (postive/negative/trend)
3p24.3	chr3:16400000-23900000	1 (0/0/1)
3p24.3-24.1	chr3:16400000-30900000	1 (0/0/1)
3q13.32	chr3:117300000-119000000	1 (0/1/0)
3q21.2	chr3:123800000-125800000	1 (0/0/1)
3q24	chr3:142800000-148900000	1 (0/1/0)

View in gBrowse

Region: chr3:0..198022430 View in gBrowse
(The coordinate of the CNV has been transformed to NCBI Build 37 (hg19) in gBrowse)