ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs7631319 dbSNP Ensembl
Location	Chr3:143403277(Fwd)
Variant Alleles	C/A
Ancestral Allele	A
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000316549; ENST00000483124) nc_transcript_variant(ENST00000483124)
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Brookes K, 2006	A/C		UNPHASED TDT P-value=0.197; WHAP TDT P-value=0.026 UNPHASED TDT P-value=0.197; WHAP TDT P-value=0.026	significant association was observed in WHAP analysis significant association was observed in WHAP analysis	Significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC9A9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	3q23-q24	2(2/0/0)

Genes from other sources (count: 0)

SNPs in LD with rs7631319 (count: 22) View in gBrowse (chr3:143403277..143418401 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 1)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2360867	intron_variant; nc_transcript_variant	1(1/0/0)	0.826[ASW]; 0.96[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.957[MEX]; 1.0[TSI]

LD-proxies (count: 21)

rs_ID	Functional Annotation	r²[population]
rs6787434	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.88[CEU]
rs1447740	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.826[ASW]; 0.96[CEU]; 0.954[CHB]; 1.0[CHD]; 0.976[GIH]; 0.953[JPT]; 0.957[MEX]; 0.803[MKK]; 1.0[TSI]
rs6776693	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.958[CEU]; 0.946[CHB]; 1.0[JPT]
rs1562496	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.955[CEU]; 1.0[CHB]; 1.0[JPT]
rs2028995	downstream_gene_variant; intron_variant; nc_transcript_variant	0.96[CEU]; 1.0[CHB]; 1.0[JPT]
rs12490934	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.96[CEU]; 0.952[CHB]; 1.0[JPT]
rs7620747	downstream_gene_variant; intron_variant; nc_transcript_variant	0.96[CEU]; 1.0[CHB]; 1.0[JPT]
rs10513217	intron_variant; nc_transcript_variant	0.96[CEU]; 1.0[CHB]; 1.0[JPT]
rs10935501	downstream_gene_variant; intron_variant; nc_transcript_variant	0.826[ASW]; 0.96[CEU]; 1.0[CHB]; 0.976[CHD]; 0.953[GIH]; 1.0[JPT]; 0.957[MEX]; 0.819[MKK]; 1.0[TSI]
rs12493231	intron_variant; nc_transcript_variant	1.0[ASW]; 0.96[CEU]; 1.0[CHB]; 0.976[CHD]; 1.0[GIH]; 1.0[JPT]; 0.971[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
rs6776287	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.948[CHB]; 0.951[JPT]
rs11712629	downstream_gene_variant; intron_variant; nc_transcript_variant	0.96[CEU]; 1.0[CHB]; 1.0[JPT]
rs956063	downstream_gene_variant; intron_variant; nc_transcript_variant	0.92[CEU]; 1.0[CHB]; 1.0[JPT]
rs12488445	downstream_gene_variant; intron_variant; nc_transcript_variant	0.813[ASW]; 0.96[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.957[MEX]; 0.801[MKK]; 1.0[TSI]
rs12489656	NMD_transcript_variant; intron_variant; upstream_gene_variant	0.886[CEU]; 0.954[CHB]; 1.0[CHD]; 0.906[GIH]; 1.0[JPT]; 0.878[MEX]; 1.0[TSI]
rs12053888	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.941[ASW]; 0.96[CEU]; 0.954[CHB]; 1.0[GIH]; 1.0[JPT]; 0.976[TSI]
rs4378956	intron_variant; nc_transcript_variant	0.96[CEU]; 1.0[CHB]; 1.0[JPT]
rs1992864	intron_variant; nc_transcript_variant	0.96[CEU]; 1.0[CHB]; 1.0[JPT]
rs11720752	downstream_gene_variant; intron_variant; nc_transcript_variant	0.959[CEU]; 1.0[CHB]; 1.0[JPT]
rs12486254	NMD_transcript_variant; intron_variant; upstream_gene_variant	0.886[CEU]; 0.954[CHB]; 1.0[CHD]; 0.905[GIH]; 1.0[JPT]; 0.878[MEX]; 1.0[TSI]
rs12487959	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.96[CEU]; 0.954[CHB]; 1.0[JPT]