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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

Chromosome Search Result

Search by: Chr = chr9

SNP: 216
CNV: 19
Gene: 395
Region: 8

SNP (count: 216)

Literature-origin SNPs (count: 52)

rs_ID	Location	Functional Annotation	No. of Studies (significant/non-significant/trend)
rs2519152	Chr9:136509634(Fwd)	downstream_gene_variant; intron_variant	6(2/4/0)
rs1611115	Chr9:136500515(Fwd)	upstream_gene_variant	6(1/5/0)
rs1108580	Chr9:136505114(Fwd)	intron_variant; splice_region_variant; synonymous_variant	5(1/4/0)
rs1548364	Chr9:136507742(Fwd)	intron_variant	2(0/2/0)
rs10120476	Chr9:110999316(Fwd)		1(0/1/0)
rs77905	Chr9:136518097(Fwd)	downstream_gene_variant; synonymous_variant	1(0/1/0)
rs2297354	Chr9:93404340(Fwd)	intron_variant	1(0/1/0)
rs1017753	Chr9:93377901(Fwd)	intron_variant	1(0/1/0)
rs7848810	Chr9:93407858(Fwd)	upstream_gene_variant	1(1/0/0)
rs1387926	Chr9:87632663(Fwd)	intron_variant	1(1/0/0)
rs7854469	Chr9:93372229(Fwd)	3_prime_UTR_variant	1(1/0/0)
rs7868194	Chr9:93369784(Fwd)	downstream_gene_variant	1(0/1/0)
rs1412005	Chr9:93409161(Fwd)	upstream_gene_variant	1(1/0/0)
rs2381164	Chr9:34553968(Fwd)	downstream_gene_variant; intron_variant	1(1/0/0)
rs2502731	Chr9:130976557(Fwd)	intron_variant; upstream_gene_variant	1(0/0/1)
rs2519154	Chr9:136512275(Fwd)	downstream_gene_variant; intron_variant	1(1/0/0)
rs5320	Chr9:136507473(Fwd)	missense_variant	1(1/0/0)
rs1542479	Chr9:93373049(Fwd)	3_prime_UTR_variant	1(0/1/0)
rs1545285	Chr9:87542369(Fwd)	intron_variant	1(1/0/0)
rs1073049	Chr9:87647100(Fwd)		1(1/0/0)
rs10761412	Chr9:136519590(Fwd)	downstream_gene_variant; intron_variant	1(0/1/0)
rs1076150	Chr9:136498761(Fwd)	upstream_gene_variant	1(1/0/0)
rs10780695	Chr9:87644233(Fwd)		1(1/0/0)
rs1611125	Chr9:136509312(Fwd)	downstream_gene_variant; intron_variant	1(0/1/0)
rs1080750	Chr9:34581525(Fwd)	intron_variant; nc_transcript_variant	1(1/0/0)
rs2769967	Chr9:81889358(Fwd)		1(0/0/1)
rs2773822	Chr9:135861033(Fwd)	intron_variant; upstream_gene_variant	1(0/1/0)
rs2797849	Chr9:136501941(Fwd)	intron_variant; upstream_gene_variant	1(0/1/0)
rs2797853	Chr9:136512515(Fwd)	downstream_gene_variant; intron_variant	1(0/1/0)
rs16906711	Chr9:93373278(Fwd)	3_prime_UTR_variant	1(1/0/0)
rs10983238	Chr9:119333683(Fwd)	intron_variant; nc_transcript_variant	1(0/0/1)
rs2873804	Chr9:136505644(Fwd)	intron_variant	1(0/1/0)
rs1108581	Chr9:136505241(Fwd)	intron_variant	1(0/1/0)
rs3025343	Chr9:136478355(Fwd)	nc_transcript_variant; non_coding_exon_variant	1(0/1/0)
rs3025399	Chr9:136508974(Fwd)	downstream_gene_variant; intron_variant	1(0/1/0)
rs11142062	Chr9:90658749(Fwd)		1(0/1/0)
rs6271	Chr9:136522274(Fwd)	missense_variant; nc_transcript_variant; non_coding_exon_variant	1(0/1/0)
rs17641078	Chr9:1056959(Fwd)	3_prime_UTR_variant; downstream_gene_variant; missense_variant	1(0/0/1)
rs11243897	Chr9:135618283(Fwd)	intron_variant; nc_transcript_variant	1(0/0/1)
rs6479643	Chr9:136514668(Fwd)	intron_variant	1(0/1/0)
rs11790994	Chr9:98429266(Fwd)	intron_variant; nc_transcript_variant	1(0/0/1)
rs11795386	Chr9:87602898(Fwd)	intron_variant	1(1/0/0)
rs3763613	Chr9:34584319(Fwd)	downstream_gene_variant; intron_variant	1(1/0/0)
rs689687	Chr9:93410201(Fwd)	upstream_gene_variant	1(0/1/0)
rs690111	Chr9:93377290(Fwd)	intron_variant	1(0/1/0)
rs7036351	Chr9:34592699(Fwd)	upstream_gene_variant	1(1/0/0)
rs2073833	Chr9:136520282(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant	1(0/1/0)
rs2073837	Chr9:136522928(Fwd)	intron_variant; upstream_gene_variant	1(1/0/0)
rs129882	Chr9:136523669(Fwd)	3_prime_UTR_variant; upstream_gene_variant	1(0/1/0)
rs739398	Chr9:136516570(Fwd)	downstream_gene_variant; intron_variant	1(0/1/0)
rs1331503	Chr9:93402517(Fwd)	intron_variant	1(1/0/0)
rs1331504	Chr9:93405828(Fwd)	upstream_gene_variant	1(0/1/0)

LD-proxies (count: 164)

rs_ID	Location	Functional Annotation
rs12350350	Chr9:87676170(Fwd)
rs7862675	Chr9:87681108(Fwd)
rs1982841	Chr9:87686259(Fwd)
rs7038454	Chr9:87694454(Fwd)
rs17418241	Chr9:87625848(Fwd)	intron_variant
rs1443442	Chr9:87576842(Fwd)	intron_variant
rs7047427	Chr9:87578464(Fwd)	intron_variant
rs7860622	Chr9:110998007(Fwd)
rs2034107	Chr9:87580367(Fwd)	intron_variant
rs2519143	Chr9:136502328(Fwd)	intron_variant; upstream_gene_variant
rs10979318	Chr9:111095221(Fwd)
rs4394479	Chr9:87618543(Fwd)	intron_variant
rs3025406	Chr9:136511019(Fwd)	downstream_gene_variant; intron_variant
rs12344381	Chr9:110984092(Fwd)
rs555677	Chr9:93377223(Fwd)	intron_variant
rs732833	Chr9:136520662(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant
rs2097629	Chr9:136519700(Fwd)	downstream_gene_variant; intron_variant
rs2097628	Chr9:136519702(Fwd)	downstream_gene_variant; intron_variant
rs1611131	Chr9:136522187(Fwd)	intron_variant; nc_transcript_variant; splice_region_variant
rs129915	Chr9:136524918(Fwd)	downstream_gene_variant; upstream_gene_variant
rs129928	Chr9:136528348(Fwd)	downstream_gene_variant
rs540870	Chr9:93380772(Fwd)	intron_variant
rs129888	Chr9:136528447(Fwd)	downstream_gene_variant
rs2073836	Chr9:136532134(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant
rs2073835	Chr9:136532183(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant
rs273443	Chr9:81890863(Fwd)
rs273450	Chr9:81897650(Fwd)
rs1118644	Chr9:81901856(Fwd)
rs273446	Chr9:81895230(Fwd)
rs273449	Chr9:81896716(Fwd)
rs649651	Chr9:135861241(Fwd)	intron_variant; upstream_gene_variant
rs1331502	Chr9:93402406(Fwd)	intron_variant
rs1565448	Chr9:87651069(Fwd)
rs1017754	Chr9:93409910(Fwd)	upstream_gene_variant
rs2200968	Chr9:87652112(Fwd)
rs4744473	Chr9:93402190(Fwd)	intron_variant
rs10780697	Chr9:87654393(Fwd)
rs7854744	Chr9:93407912(Fwd)	upstream_gene_variant
rs587861	Chr9:87658584(Fwd)
rs1831521	Chr9:93409357(Fwd)	upstream_gene_variant
rs678654	Chr9:87659992(Fwd)
rs12684237	Chr9:93418598(Fwd)
rs474899	Chr9:87660797(Fwd)
rs7860740	Chr9:93427347(Fwd)
rs684006	Chr9:87671972(Fwd)
rs6479614	Chr9:93430175(Fwd)
rs596201	Chr9:87677761(Fwd)
rs1360471	Chr9:93436857(Fwd)
rs2808708	Chr9:87681581(Fwd)
rs1331507	Chr9:93412927(Fwd)
rs614886	Chr9:87682475(Fwd)
rs17454793	Chr9:93436604(Fwd)
rs12682953	Chr9:93437536(Fwd)
rs11142056	Chr9:90653110(Fwd)
rs2797851	Chr9:136504580(Fwd)	intron_variant
rs2519155	Chr9:136504598(Fwd)	intron_variant
rs2797852	Chr9:136504653(Fwd)	intron_variant
rs12378021	Chr9:87635540(Fwd)	intron_variant
rs3003602	Chr9:130981064(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs3003608	Chr9:130984430(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs16930313	Chr9:130993397(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs13285411	Chr9:130997868(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant
rs2502728	Chr9:130973058(Fwd)	intron_variant
rs9644916	Chr9:130998850(Fwd)	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant
rs4879816	Chr9:34670128(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs16906689	Chr9:93348404(Fwd)	upstream_gene_variant
rs4878585	Chr9:34674762(Fwd)	intron_variant; nc_transcript_variant
rs10901207	Chr9:135618325(Fwd)	intron_variant; nc_transcript_variant
rs16906717	Chr9:93379328(Fwd)	intron_variant
rs3176818	Chr9:34687936(Fwd)	downstream_gene_variant
rs1331506	Chr9:93412437(Fwd)
rs690232	Chr9:93382438(Fwd)	intron_variant
rs3176813	Chr9:34690811(Fwd)	intron_variant; upstream_gene_variant
rs1466381	Chr9:93403987(Fwd)	intron_variant
rs1061758	Chr9:34652330(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant
rs7029114	Chr9:93417933(Fwd)
rs1819453	Chr9:93420607(Fwd)
rs6479615	Chr9:93433370(Fwd)
rs1331494	Chr9:93436252(Fwd)
rs3025425	Chr9:136523166(Fwd)	intron_variant; upstream_gene_variant
rs10993948	Chr9:136522902(Fwd)	intron_variant; upstream_gene_variant
rs3802427	Chr9:34618641(Fwd)	NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant
rs10814129	Chr9:34623718(Fwd)	intron_variant; splice_region_variant; upstream_gene_variant
rs16931689	Chr9:34607766(Fwd)	downstream_gene_variant
rs11791806	Chr9:34633529(Fwd)	downstream_gene_variant; upstream_gene_variant
rs3025316	Chr9:136459543(Fwd)
rs10814130	Chr9:34637991(Fwd)	upstream_gene_variant
rs739447	Chr9:136477511(Fwd)	nc_transcript_variant; non_coding_exon_variant
rs1360474	Chr9:93406330(Fwd)	upstream_gene_variant
rs10990665	Chr9:98415547(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant
rs3025360	Chr9:136481205(Fwd)	intron_variant; nc_transcript_variant
rs4744474	Chr9:93410547(Fwd)
rs10991145	Chr9:98424542(Fwd)	intron_variant; nc_transcript_variant
rs10821481	Chr9:93411724(Fwd)
rs1335050	Chr9:98426639(Fwd)	intron_variant; nc_transcript_variant
rs10821483	Chr9:93417987(Fwd)
rs10820734	Chr9:98430864(Fwd)	intron_variant; nc_transcript_variant
rs4744000	Chr9:93418243(Fwd)
rs3860945	Chr9:87585624(Fwd)	intron_variant
rs7030418	Chr9:93435825(Fwd)
rs4314726	Chr9:87589244(Fwd)	intron_variant
rs7859015	Chr9:93436578(Fwd)
rs13299387	Chr9:34669005(Fwd)	intron_variant; nc_transcript_variant; upstream_gene_variant
rs4615661	Chr9:87594400(Fwd)	intron_variant
rs10993624	Chr9:93439569(Fwd)
rs13440094	Chr9:87619071(Fwd)	intron_variant
rs12004340	Chr9:93366369(Fwd)
rs6478237	Chr9:119192516(Fwd)	intron_variant
rs13292335	Chr9:119221205(Fwd)	intron_variant
rs12156498	Chr9:119226048(Fwd)	intron_variant
rs12005639	Chr9:119238756(Fwd)	intron_variant
rs1861883	Chr9:119247049(Fwd)	intron_variant
rs12377406	Chr9:119248464(Fwd)	intron_variant
rs10983193	Chr9:119250600(Fwd)	intron_variant
rs10983211	Chr9:119279253(Fwd)	intron_variant; nc_transcript_variant
rs12379128	Chr9:119300567(Fwd)	intron_variant; nc_transcript_variant
rs888398	Chr9:119304356(Fwd)	intron_variant; nc_transcript_variant
rs12115644	Chr9:119306580(Fwd)	intron_variant; nc_transcript_variant
rs10983229	Chr9:119307773(Fwd)	intron_variant; nc_transcript_variant
rs12376892	Chr9:119348005(Fwd)	intron_variant; nc_transcript_variant; non_coding_exon_variant
rs17292540	Chr9:119351429(Fwd)	downstream_gene_variant; intron_variant
rs10983260	Chr9:119365260(Fwd)	intron_variant
rs10983262	Chr9:119367308(Fwd)	intron_variant
rs10491578	Chr9:119383888(Fwd)	intron_variant
rs13302089	Chr9:119413115(Fwd)	intron_variant
rs10983300	Chr9:119433245(Fwd)	intron_variant
rs17220476	Chr9:119452120(Fwd)	intron_variant; upstream_gene_variant
rs10983243	Chr9:119338340(Fwd)	intron_variant; nc_transcript_variant
rs10758267	Chr9:34566734(Fwd)	intron_variant; upstream_gene_variant
rs10758268	Chr9:34572767(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs10814119	Chr9:34550295(Fwd)	downstream_gene_variant; upstream_gene_variant
rs129884	Chr9:136525086(Fwd)	downstream_gene_variant; upstream_gene_variant
rs2274592	Chr9:34552437(Fwd)	downstream_gene_variant; intron_variant
rs129886	Chr9:136528721(Fwd)	3_prime_UTR_variant; downstream_gene_variant
rs4363285	Chr9:34553667(Fwd)	downstream_gene_variant; intron_variant
rs129885	Chr9:136527226(Fwd)	downstream_gene_variant; upstream_gene_variant
rs10738931	Chr9:34565781(Fwd)	intron_variant; upstream_gene_variant
rs4472605	Chr9:34566190(Fwd)	intron_variant; upstream_gene_variant
rs7876027	Chr9:136514539(Fwd)	intron_variant
rs2297353	Chr9:93404408(Fwd)	intron_variant
rs16906728	Chr9:93397205(Fwd)	intron_variant
rs12685637	Chr9:93297966(Fwd)	intron_variant; nc_transcript_variant
rs12684569	Chr9:93322890(Fwd)	downstream_gene_variant; intron_variant; nc_transcript_variant
rs2808707	Chr9:87558294(Fwd)	intron_variant
rs995861	Chr9:87541642(Fwd)	intron_variant
rs6559838	Chr9:87553563(Fwd)	intron_variant
rs1611122	Chr9:136508932(Fwd)	downstream_gene_variant; intron_variant
rs2165892	Chr9:87559707(Fwd)	intron_variant
rs1541333	Chr9:136511385(Fwd)	downstream_gene_variant; intron_variant
rs3025388	Chr9:136503256(Fwd)	intron_variant
rs1611120	Chr9:136507301(Fwd)	intron_variant
rs1611123	Chr9:136509083(Fwd)	downstream_gene_variant; intron_variant
rs972604	Chr9:87648729(Fwd)
rs17334250	Chr9:87657989(Fwd)
rs17334480	Chr9:87665823(Fwd)
rs11791017	Chr9:87654600(Fwd)
rs9886759	Chr9:87657757(Fwd)
rs11140837	Chr9:87659842(Fwd)
rs1038763	Chr9:87662368(Fwd)
rs11140840	Chr9:87663761(Fwd)
rs17419081	Chr9:87665585(Fwd)
rs7019906	Chr9:87666637(Fwd)
rs12338789	Chr9:87668792(Fwd)
rs1490402	Chr9:87673253(Fwd)

CNV (count: 19)

ID	Band	Size	Type	Inheritance	Related Genes
CNV_Elia[2010]_114	9p24.1	9676	Deletion (hemizygous)	Maternal
CNV_Elia[2010]_115	9p23	34521	Deletion (hemizygous)	Paternal	PTPRD
CNV_Elia[2010]_116	9p23	262923	Deletion (hemizygous)	Maternal	PTPRD
CNV_Elia[2010]_117	9p23	63300	Deletion (hemizygous)	Maternal
CNV_Elia[2010]_118	9p21.2	151980	Deletion (hemizygous)	Maternal
CNV_Elia[2010]_119	9p23	94061	Deletion (hemizygous)	Maternal	PTPRD
CNV_Elia[2010]_120	9p23	632730	Deletion (hemizygous)	Paternal
CNV_Elia[2010]_121	9p23	177684	Deletion (hemizygous)	Paternal
CNV_Elia[2010]_122	9p21.2	10042	Deletion (hemizygous)	Paternal	C9orf11
CNV_Elia[2010]_123	9p21.2	151980	Deletion (hemizygous)	Maternal
CNV_Elia[2010]_124	9p24.3	91410	Deletion (hemizygous)	Maternal	DOCK8
CNV_Elia[2010]_125	9q31.1	61370	Deletion (hemizygous)	Maternal
CNV_Elia[2010]_126	9p24.3	31633	Deletion (hemizygous)	Paternal	C9orf66 CBWD1 DOCK8 FOXD4
CNV_Elia[2010]_127	9p23	161680	Deletion (hemizygous)	Maternal
CNV_Elia[2010]_128	9p24.3	97481	Deletion (hemizygous)	Maternal
CNV_Elia[2010]_129	9p23	899044	Deletion (hemizygous)	Paternal	PTPRD
CNV_Elia[2010]_130	9p21.1	39202	Deletion (hemizygous)	Paternal	LINGO2
CNV_Lesch[2011]_16	9p21.3	119725	Deletion	Paternal (affected)
CNV_Jarick[2012]_20	9q31.1-9q31.2	572275	dup		ABCA1 SLC44A1

Gene (count: 395)

Literature-origin genes (count: 13)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DBH	dopamine beta-hydroxylase (dopamine beta-monooxygenase)	9q34	20(11/9/0)
NFIL3	nuclear factor, interleukin 3 regulated	9q22	2(1/1/0)
ASTN2	astrotactin 2	9q33	2(0/0/2)
DMRT2	doublesex and mab-3 related transcription factor 2	9p24.3	1(0/0/1)
CDK20	cyclin-dependent kinase 20	9q22.1	1(0/1/0)
RPL31P43	ribosomal protein L31 pseudogene 43	9q31.2	1(0/1/0)
TRIM32	tripartite motif containing 32	9q33.1	1(0/0/1)
AK8	adenylate kinase 8	9q34.13	1(0/0/1)
CNTFR	ciliary neurotrophic factor receptor	9p13	1(1/0/0)
DNM1	dynamin 1	9q34	1(0/0/1)
GFI1B	growth factor independent 1B transcription repressor	9q34.13	1(0/1/0)
NTRK2	neurotrophic tyrosine kinase, receptor, type 2	9q22.1	1(1/0/0)
DIRAS2	DIRAS family, GTP-binding RAS-like 2	9q22.32	1(1/0/0)

Genes from other sources (count: 382)

Approved Symbol	Approved Name	Location
RPS26P37	ribosomal protein S26 pseudogene 37	9q22.3
FAM75C1	family with sequence similarity 75, member C1	9q22.1
IARS	isoleucyl-tRNA synthetase	9q21
PSMD5	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	9q34.11
FAM75C2	family with sequence similarity 75, member C2	9q22.1
OR2K2	olfactory receptor, family 2, subfamily K, member 2	9q31.3
ARID3C	AT rich interactive domain 3C (BRIGHT-like)	9p13.2
MIR455	microRNA 455	9q32
PTCH1	patched 1	9q22.1-q31
ATP6V1G1	ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1	9q33.1
PTGR1	prostaglandin reductase 1	9q32
PTGS1	prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)	9q32-q33.3
AUH	AU RNA binding protein/enoyl-CoA hydratase	9q22
MIR600	microRNA 600	9q33.3
PTPDC1	protein tyrosine phosphatase domain containing 1	9q22.32
FANCC	Fanconi anemia, complementation group C	9q22.3
MIR601	microRNA 601	9q33.3
PTPN3	protein tyrosine phosphatase, non-receptor type 3	9q31
IKBKAP	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein	9q31
FBP1	fructose-1,6-bisphosphatase 1	9q22.3
RPS2P35	ribosomal protein S2 pseudogene 35	9q31.1
C9orf23	chromosome 9 open reading frame 23	9p11.2
FBP2	fructose-1,6-bisphosphatase 2	9q22.3
C9orf92	chromosome 9 open reading frame 92	9
BAAT	bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)	9q22.3
MIRLET7A1	microRNA let-7a-1	9q22.32
BAATP1	bile acid CoA: amino acid N-acyltransferase pseudogene 1	9q21.11
CKS2	CDC28 protein kinase regulatory subunit 2	9q22
MIRLET7D	microRNA let-7d	9q22.32
STOM	stomatin	9q34.1
FBXW2	F-box and WD repeat domain containing 2	9q34
MIRLET7F1	microRNA let-7f-1	9q22.32
STRBP	spermatid perinuclear RNA binding protein	9q33.1-q33.3
CCL19	chemokine (C-C motif) ligand 19	9p13
IL6RP1	interleukin 6 receptor pseudogene 1	9q22.2
STX17	syntaxin 17	9q31.1
UPF3AP3	UPF3 regulator of nonsense transcripts homolog A (yeast) pseudogene 3	9q31.1
CCL27	chemokine (C-C motif) ligand 27	9p13
FOXD4	forkhead box D4	9p24.3
BARX1	BARX homeobox 1	9q22.32
DBH-AS1	DBH antisense RNA 1 [MODEL Refseq, miscRNA]	9q34.2
FGD3	FYVE, RhoGEF and PH domain containing 3	9q22
RABEPK	Rab9 effector protein with kelch motifs	9q33.1-q33.3
RABGAP1	RAB GTPase activating protein 1	9q34.11
SUSD1	sushi domain containing 1	9q31.3-q33.1
SUSD3	sushi domain containing 3	9q22.32
INVS	inversin	9q31
SVEP1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	9q31-q32
VDAC1P11	voltage-dependent anion channel 1 pseudogene 11	9
MORN5	MORN repeat containing 5	9q34.11
RAD23B	RAD23 homolog B (S. cerevisiae)	9q31.2
IPPK	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	9q22.31
FKBP15	FK506 binding protein 15, 133kDa	9q33.1
SYK	spleen tyrosine kinase	9q22
COL15A1	collagen, type XV, alpha 1	9q21-q22
RALGAPA1P	Ral GTPase activating protein, alpha subunit 1 (catalytic) pseudogene	9q31
VN1R51P	vomeronasal 1 receptor 51 pseudogene	9q22.33
DCTN3	dynactin 3 (p22)	9p13
BICD2	bicaudal D homolog 2 (Drosophila)	9q22.32
COL27A1	collagen, type XXVII, alpha 1	9q33.1
RALGPS1	Ral GEF with PH domain and SH3 binding motif 1	9q33.3
VN1R52P	vomeronasal 1 receptor 52 pseudogene	9q22.33
FKTN	fukutin	9q31-q33
CORO2A	coronin, actin binding protein, 2A	9q22.3
RPSAP49	ribosomal protein SA pseudogene 49	9q22.1
RBM18	RNA binding motif protein 18	9q34.11
BSPRY	B-box and SPRY domain containing	9q33.1
MRPL50	mitochondrial ribosomal protein L50	9
CRB2	crumbs homolog 2 (Drosophila)	9q33.2
NCRNA00118	non-protein coding RNA 118	9q34.2
RC3H2	ring finger and CCCH-type domains 2	9q34
MRRF	mitochondrial ribosome recycling factor	9q32-q34.1
FOXE1	forkhead box E1 (thyroid transcription factor 2)	9q22
TAL2	T-cell acute lymphocytic leukemia 2	9q32
WDR31	WD repeat domain 31	9q33.1
WDR38	WD repeat domain 38	9q33.3
GALT	galactose-1-phosphate uridylyltransferase	9p13
S1PR3	sphingosine-1-phosphate receptor 3	9q22.1-q22.2
TBC1D2	TBC1 domain family, member 2	9q22.32
OR5C1	olfactory receptor, family 5, subfamily C, member 1	9q34.2
SCAI	suppressor of cancer cell invasion	9q34.11
WNK2	WNK lysine deficient protein kinase 2	9q22.3
CTNNAL1	catenin (cadherin-associated protein), alpha-like 1	9q31.2
FSD1L	fibronectin type III and SPRY domain containing 1-like	9q31
KIAA0368	KIAA0368	9q32
TCEA1P1	transcription elongation factor A (SII), 1 pseudogene 1	9q22.33
RGS3	regulator of G-protein signaling 3	9q32
XPA	xeroderma pigmentosum, complementation group A	9q22.3
MT1P1	metallothionein 1 pseudogene 1	9q22.32
CTSL1P8	cathepsin L1 pseudogene 8	9q22.1
CTSL2	cathepsin L2	9q22.33
KIAA1958	KIAA1958	9q33.1
OR7E108P	olfactory receptor, family 7, subfamily E, member 108 pseudogene	9
TDRD7	tudor domain containing 7	9q22.33
CTSL3	cathepsin L family member 3	9q21.33
OR7E109P	olfactory receptor, family 7, subfamily E, member 109 pseudogene	9
KIF12	kinesin family member 12	9q33.1
OR7E116P	olfactory receptor, family 7, subfamily E, member 116 pseudogene	9
TEX10	testis expressed 10	9q31.1
IL11RA	interleukin 11 receptor, alpha	9p13
KLF4	Kruppel-like factor 4 (gut)	9q31
MURC	muscle-related coiled-coil protein	9q31.1
FYTTD1P1	forty-two-three domain containing 1 pseudogene 1	9q31.1
MUSK	muscle, skeletal, receptor tyrosine kinase	9q31.3-q32
TGFBR1	transforming growth factor, beta receptor 1	9q22
ZBTB26	zinc finger and BTB domain containing 26	9q34.11
OR7E31P	olfactory receptor, family 7, subfamily E, member 31 pseudogene	9
ZBTB34	zinc finger and BTB domain containing 34	9q33.3
GABBR2	gamma-aminobutyric acid (GABA) B receptor, 2	9q22.1-q22.3
ZBTB43	zinc finger and BTB domain containing 43	9p24.1-q22.33
CYCSP24	cytochrome c, somatic pseudogene 24	9q22.32
GADD45G	growth arrest and DNA-damage-inducible, gamma	9q22.1-q22.2
SEC61B	Sec61 beta subunit	9q22.32-q31.3
ZBTB6	zinc finger and BTB domain containing 6	9q33.1-q33.3
SECISBP2	SECIS binding protein 2	9q22
SEMA4D	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	9q22-q31
GALNT12	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)	9q22.33
NANOGP5	Nanog homeobox pseudogene 5	9q31.1
RNF183	ring finger protein 183	9q32
SEPT7P7	septin 7 pseudogene 7	9q22.33
PTPRD	protein tyrosine phosphatase, receptor type, D	9p24.1-p23
NANS	N-acetylneuraminic acid synthase	9p24.1-p23
KRT18P13	keratin 18 pseudogene 13	9q22.33
RNF20	ring finger protein 20	9q22
TLK1P1	tousled-like kinase 1 pseudogene 1	9q33
GAPDHP26	glyceraldehyde 3 phosphate dehydrogenase pseudogene 26	9q31.1
TLR4	toll-like receptor 4	9q33.1
CYLC2	cylicin, basic protein of sperm head cytoskeleton 2	9q31.2
TSC1	tuberous sclerosis 1	9q34
KRT8P11	keratin 8 pseudogene 11	9q22.33
ZFP37	zinc finger protein 37 homolog (mouse)	9q32
GAPVD1	GTPase activating protein and VPS9 domains 1	9q34.11
DAB2IP	DAB2 interacting protein	9q33.1-q33.3
GARNL3	GTPase activating Rap/RanGAP domain-like 3	9q34.13
NCBP1	nuclear cap binding protein subunit 1, 80kDa	9q34.1
TMEFF1	transmembrane protein with EGF-like and two follistatin-like domains 1	9q31
RNU5B-5P	RNA, U5B small nuclear 5 pseudogene	9q33.3
SHC3	SHC (Src homology 2 domain containing) transforming protein 3	9q22.1
DBC1	deleted in bladder cancer 1	9q32-q33
NCRNA00092	non-protein coding RNA 92	9q22.32
ZNF169	zinc finger protein 169	9q22.32
NCRNA00256A	non-protein coding RNA 256A	9q32
ZNF189	zinc finger protein 189	9q22-q31
NCRNA00256B	non-protein coding RNA 256B	9q32
NCRNA00287	non-protein coding RNA 287	9q34.11
RNY4P18	RNA, Ro-associated Y4 pseudogene 18	9q31.3
SKA2L	spindle and kinetochore associated complex subunit 2-like	9q33.2
ZNF322B	zinc finger protein 322B	9q22.33
GSN	gelsolin	9q33
NDUFA8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa	9q33.2
ROD1	ROD1 regulator of differentiation 1 (S. pombe)	9q32
ZNF367	zinc finger protein 367	9q22
LINGO2	leucine rich repeat and Ig domain containing 2	9p21.2
DEC1	deleted in esophageal cancer 1	9q32
PSMA7P	proteasome (prosome, macropain) subunit, alpha type, 7 pseudogene	9q22.31
ROR2	receptor tyrosine kinase-like orphan receptor 2	9q22
NDUFB3P2	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 2	9q33.3
ZNF462	zinc finger protein 462	9q31.3
DENND1A	DENN/MADD domain containing 1A	9q34.11
DEPDC1P2	DEP domain containing 1 pseudogene 2	9q31.2
ZNF483	zinc finger protein 483	9q32
LHX2	LIM homeobox 2	9q33.3
RPL10P3	ribosomal protein L10 pseudogene 3	9
ZNF484	zinc finger protein 484	9q22.32
DFNB31	deafness, autosomal recessive 31	9q32-q34
LHX6	LIM homeobox 6	9q33.2
RPL12	ribosomal protein L12	9q34
ZNF510	zinc finger protein 510	9q22.33
RAB14	RAB14, member RAS oncogene family	9q32-q34.11
C5	complement component 5	9q33-q34
ORM1	orosomucoid 1	9q31-qter
ORM2	orosomucoid 2	9q31-qter
TMEM38B	transmembrane protein 38B	9q31.3
ZNF618	zinc finger protein 618	9q33.1
NEK6	NIMA (never in mitosis gene a)-related kinase 6	9q33.3-q34.11
TMOD1	tropomodulin 1	9q22
LMX1B	LIM homeobox transcription factor 1, beta	9q33.3
LPAR1	lysophosphatidic acid receptor 1	9q
GNG10	guanine nucleotide binding protein (G protein), gamma 10	9q31.3
ZNF782	zinc finger protein 782	9q22.33
SLC2A8	solute carrier family 2 (facilitated glucose transporter), member 8	9q33.3
ZNF79	zinc finger protein 79	9q34
C9orf11	chromosome 9 open reading frame 11	9p21
GOLGA1	golgin A1	9q34.11
ZNF883	zinc finger protein 883	9q32
C9orf66	chromosome 9 open reading frame 66	9p24.3
SLC31A1	solute carrier family 31 (copper transporters), member 1	9q31-q32
SLC44A1	solute carrier family 44, member 1	9q31.2
SLC31A2	solute carrier family 31 (copper transporters), member 2	9q31-q32
DNAJC25	DnaJ (Hsp40) homolog, subfamily C , member 25	9q31.3
SLC35D2	solute carrier family 35, member D2	9q22.33
DNAJC25-GNG10	DNAJC25-GNG10 readthrough	9q31.3
LRSAM1	leucine rich repeat and sterile alpha motif containing 1	9q34.13
NINJ1	ninjurin 1	9q22
PA2G4P6	proliferation-associated 2G4 pseudogene 6	9q22.2
TNC	tenascin C	9q32-q34
ZYG11AP1	zyg-11 homolog A (C. elegans) pseudogene 1	9q31.1
C9orf102	chromosome 9 open reading frame 102	9q22.32
C9orf107	chromosome 9 open reading frame 107	9q31.1
PAICSP2	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 2	9q22
C9orf118	chromosome 9 open reading frame 118	9q22.32
NIPSNAP3A	nipsnap homolog 3A (C. elegans)	9q31.3
TNFSF15	tumor necrosis factor (ligand) superfamily, member 15	9q32
C9orf125	chromosome 9 open reading frame 125	9q31.1
NIPSNAP3B	nipsnap homolog 3B (C. elegans)	9q31.3
C9orf129	chromosome 9 open reading frame 129	9
PALM2	paralemmin 2	9q31.3
CBWD1	COBW domain containing 1	9p24.3
C9orf130	chromosome 9 open reading frame 130	9q22.33
PALM2-AKAP2	PALM2-AKAP2 readthrough	9q31.3
TNFSF8	tumor necrosis factor (ligand) superfamily, member 8	9q33
C9orf147	chromosome 9 open reading frame 147	9q32
C9orf148	chromosome 9 open reading frame 148	9q34.11
SLC46A2	solute carrier family 46, member 2	9q32
C9orf152	chromosome 9 open reading frame 152	9q31.3
PAPPA	pregnancy-associated plasma protein A, pappalysin 1	9q33.1
C9orf156	chromosome 9 open reading frame 156	9q31.1
NOL8	nucleolar protein 8	9q22.32
C9orf174	chromosome 9 open reading frame 174	9q22.33
ACTL7A	actin-like 7A	9q31
C9orf21	chromosome 9 open reading frame 21	9q22.32
ACTL7B	actin-like 7B	9q31
C9orf27	chromosome 9 open reading frame 27	9q31.3
RPL21P82	ribosomal protein L21 pseudogene 82	9q22.31
C9orf29	chromosome 9 open reading frame 29	9q31.3
GPR144	G protein-coupled receptor 144	9q34.11
RPL21P85	ribosomal protein L21 pseudogene 85	9q22.1-q22.3
C9orf3	chromosome 9 open reading frame 3	9q22
RPL21P86	ribosomal protein L21 pseudogene 86	9q22.31
C9orf30	chromosome 9 open reading frame 30	9q31.1
GPR21	G protein-coupled receptor 21	9q33
MAPKAP1	mitogen-activated protein kinase associated protein 1	9q34.11
RPL21P87	ribosomal protein L21 pseudogene 87	9q31.3
C9orf30-TMEFF1	C9orf30-TMEFF1 readthrough	9q31.1
PBX3	pre-B-cell leukemia homeobox 3	9q33.3
C9orf31	chromosome 9 open reading frame 31	9q34.11
C9orf4	chromosome 9 open reading frame 4	9q31.1-q31.2
TRAF1	TNF receptor-associated factor 1	9q33-q34
C9orf43	chromosome 9 open reading frame 43	9q33.1
SMC2	structural maintenance of chromosomes 2	9q31.1
C9orf44	chromosome 9 open reading frame 44	9q22.31
C9orf47	chromosome 9 open reading frame 47	9q22.1
C9orf5	chromosome 9 open reading frame 5	9q31
PDCL	phosducin-like	9q12-q13
CACNA1B	calcium channel, voltage-dependent, N type, alpha 1B subunit	9q34
C9orf6	chromosome 9 open reading frame 6	9q31
C9orf73	chromosome 9 open reading frame 73	9q22.31
TRIM14	tripartite motif containing 14	9q31.1
ABCA1	ATP-binding cassette, sub-family A (ABC1), member 1	9q31
C9orf79	chromosome 9 open reading frame 79	9q22.1-q22.2
NR4A3	nuclear receptor subfamily 4, group A, member 3	9q22
C9orf80	chromosome 9 open reading frame 80	9q32
NR5A1	nuclear receptor subfamily 5, group A, member 1	9q33
C9orf84	chromosome 9 open reading frame 84	9q32
NR6A1	nuclear receptor subfamily 6, group A, member 1	9q33.3
C9orf89	chromosome 9 open reading frame 89	9q22.32
GRIN3A	glutamate receptor, ionotropic, N-methyl-D-aspartate 3A	9q
AKAP2	A kinase (PRKA) anchor protein 2	9q31.3
C9orf91	chromosome 9 open reading frame 91	9q33.1
ECM2	extracellular matrix protein 2, female organ and adipocyte specific	9q22.3
AKNA	AT-hook transcription factor	9q32
MEGF9	multiple EGF-like-domains 9	9q32-q33.3
ALAD	aminolevulinate dehydratase	9q32
RPL29P20	ribosomal protein L29 pseudogene 20	9q32
EEF1DP2	eukaryotic translation elongation factor 1 delta pseudogene 2	9q22.31
ALDOB	aldolase B, fructose-bisphosphate	9q21.3-q22.2
HABP4	hyaluronan binding protein 4	9q22.3-q31
SNORA65	small nucleolar RNA, H/ACA box 65	9q33.3
ALG2	asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)	9q31.1
SNORA70C	small nucleolar RNA, H/ACA box 70C (retrotransposed)	9q33.1
PHF19	PHD finger protein 19	9q34.11
RPL32P22	ribosomal protein L32 pseudogene 22	9q32
PHF2	PHD finger protein 2	9q22
NXNL2	nucleoredoxin-like 2	9q22.2
HDHD3	haloacid dehalogenase-like hydrolase domain containing 3	9q33.1
SNORA84	small nucleolar RNA, H/ACA box 84	9q22.31
ALOX15P2	arachidonate 15-lipoxygenase pseudogene 2	9q22.31
RPL35	ribosomal protein L35	9q34.1
RPP25L	ribonuclease P/MRP 25kDa subunit-like	9p13.3
AMBP	alpha-1-microglobulin/bikunin precursor	9q32-q33
EIF4BP3	eukaryotic translation initiation factor 4B pseudogene 3	9q22.32
RPL35AP22	ribosomal protein L35a pseudogene 22	9
ELF2P3	E74-like factor 2 pseudogene 3	9q22.1
HEMGN	hemogen	9q22.33
OGN	osteoglycin	9q22
ANGPTL2	angiopoietin-like 2	9q34
OLFML2A	olfactomedin-like 2A	9q34.11
RPL36AP35	ribosomal protein L36a pseudogene 35	9
OMD	osteomodulin	9q22.31
RPL36AP6	ribosomal protein L36a pseudogene 6	9
RPL36P14	ribosomal protein L36 pseudogene 14	9q31.3
MIR1302-8	microRNA 1302-8	9
SARDH	sarcosine dehydrogenase	9q33-q34
EPB41L4B	erythrocyte membrane protein band 4.1 like 4B	9q22.1-q22.3
HIATL1	hippocampus abundant transcript-like 1	9q22.32
MIR147	microRNA 147	9q33.2
TRNAR6	transfer RNA arginine 6 (anticodon UCG)	9
HIATL2	hippocampus abundant transcript-like 2	9q22.33
ANKS6	ankyrin repeat and sterile alpha motif domain containing 6	9q31.1
MIR181A2	microRNA 181a-2	9q33.3
ERP44	endoplasmic reticulum protein 44	9q22.33
MIR181A2HG	MIR181A2 host gene (non-protein coding)	9q33.3
MIR181B2	microRNA 181b-2	9q33.3
SIGMAR1	sigma non-opioid intracellular receptor 1	9p13.3
ANP32B	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	9q22.32
HMGB1P37	high mobility group box 1 pseudogene 37	9q33.2
MIR2278	microRNA 2278	9
RPL7AP44	ribosomal protein L7a pseudogene 44	9q31.2
MIR23B	microRNA 23b	9q22.32
MIR24-1	microRNA 24-1	9q22.32
POLE3	polymerase (DNA directed), epsilon 3 (p17 subunit)	9q33
MIR27B	microRNA 27b	9q22.32
TSTD2	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	9
MIR3074	microRNA 3074	9
OR13C1P	olfactory receptor, family 13, subfamily C, member 1 pseudogene	9
SNORD90	small nucleolar RNA, C/D box 90	9q33.2
OR13C2	olfactory receptor, family 13, subfamily C, member 2	9
TTLL11	tubulin tyrosine ligase-like family, member 11	9q34.11
OR13C3	olfactory receptor, family 13, subfamily C, member 3	9
MIR3153	microRNA 3153	9
OR13C4	olfactory receptor, family 13, subfamily C, member 4	9
OR13C5	olfactory receptor, family 13, subfamily C, member 5	9
CDC14B	CDC14 cell division cycle 14 homolog B (S. cerevisiae)	9q22.3
FAM120A	family with sequence similarity 120A	9q22.31
OR13C8	olfactory receptor, family 13, subfamily C, member 8	9
CDC26	cell division cycle 26 homolog (S. cerevisiae)	9q32
FAM120AOS	family with sequence similarity 120A opposite strand	9q22.32
OR13C9	olfactory receptor, family 13, subfamily C, member 9	9
PPP3R2	protein phosphatase 3, regulatory subunit B, beta	9q31
RPS10P17	ribosomal protein S10 pseudogene 17	9q33.3
SNX18P2	sorting nexin 18 pseudogene 2	9q22.31
FAM125B	family with sequence similarity 125, member B	9q34.12
OR13D1	olfactory receptor, family 13, subfamily D, member 1	9
PPP6C	protein phosphatase 6, catalytic subunit	9q33.3
DOCK8	dedicator of cytokinesis 8	9p24.3
ARL2BPP7	ADP-ribosylation factor-like 2 binding protein pseudogene 7	9q31.1
OR13D2P	olfactory receptor, family 13, subfamily D, member 2 pseudogene	9
SNX30	sorting nexin family member 30	9q33.1
OR13D3P	olfactory receptor, family 13, subfamily D, member 3 pseudogene	9
RPS10P3	ribosomal protein S10 pseudogene 3	9q22.1
FAM129B	family with sequence similarity 129, member B	9q34.13
OR13F1	olfactory receptor, family 13, subfamily F, member 1	9
TXN	thioredoxin	9q31
OR13I1P	olfactory receptor, family 13, subfamily I, member 1 pseudogene	9
TXNDC8	thioredoxin domain containing 8 (spermatozoa)	9q31.3
OR1B1	olfactory receptor, family 1, subfamily B, member 1	9q33.2
OR1H1P	olfactory receptor, family 1, subfamily H, member 1 pseudogene	9
ARPC5L	actin related protein 2/3 complex, subunit 5-like	9q34.11
MIR32	microRNA 32	9q31.3
OR1J1	olfactory receptor, family 1, subfamily J, member 1	9
CDK5RAP2	CDK5 regulatory subunit associated protein 2	9q33.3
OR1J2	olfactory receptor, family 1, subfamily J, member 2	9
OR1J4	olfactory receptor, family 1, subfamily J, member 4	9
FAM22F	family with sequence similarity 22, member F	9q22.32
OR1K1	olfactory receptor, family 1, subfamily K, member 1	9
ASPN	asporin	9q22.31
FAM22G	family with sequence similarity 22, member G	9q22.33
OR1L1	olfactory receptor, family 1, subfamily L, member 1	9
RPS15AP27	ribosomal protein S15a pseudogene 27	9
OR1L3	olfactory receptor, family 1, subfamily L, member 3	9
OR1L4	olfactory receptor, family 1, subfamily L, member 4	9
HSD17B3	hydroxysteroid (17-beta) dehydrogenase 3	9q22
OR1L6	olfactory receptor, family 1, subfamily L, member 6	9
HSDL2	hydroxysteroid dehydrogenase like 2	9q32
OR1L8	olfactory receptor, family 1, subfamily L, member 8	9
PRPF4	PRP4 pre-mRNA processing factor 4 homolog (yeast)	9q31-q33
SPIN1	spindlin 1	9q22.1
OR1N1	olfactory receptor, family 1, subfamily N, member 1	9q34.11
PRPS1P2	phosphoribosyl pyrophosphate synthetase 1 pseudogene 2	9q33.3
RPS21P5	ribosomal protein S21 pseudogene 5	9q31.3-q32
HSPA5	heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)	9q33.3
OR1N2	olfactory receptor, family 1, subfamily N, member 2	9
OR1Q1	olfactory receptor, family 1, subfamily Q, member 1	9
CENPP	centromere protein P	9q22.31
MIR4289	microRNA 4289	9
PRSS47	protease, serine, 47	9q22.31
SPTLC1	serine palmitoyltransferase, long chain base subunit 1	9q22.31
MIR4290	microRNA 4290	9
RPS25P8	ribosomal protein S25 pseudogene 8	9q33.2
MIR4291	microRNA 4291	9
UGCG	UDP-glucose ceramide glucosyltransferase	9q31
PSMB7	proteasome (prosome, macropain) subunit, beta type, 7	9q34.11-q34.12

Region (count: 8)

Region Name	Location	No. of Studies (postive/negative/trend)
9q22	chr9:90400000-102600000	3 (1/1/1)
9q33	chr9:117700000-130300000	2 (1/1/0)
9p21.2	chr9:25600000-28000000	1 (0/0/1)
9q	chr9:49000000-141213431	1 (0/1/0)
9q21	chr9:68700000-90400000	1 (0/1/0)
9q21.32-31.1	chr9:84100000-108200000	1 (0/0/1)
9q31.1-33.1	chr9:102600000-122500000	1 (1/0/0)
9q33.3	chr9:125800000-130300000	1 (0/0/1)

View in gBrowse

Region: chr9:0..141213431 View in gBrowse
(The coordinate of the CNV has been transformed to NCBI Build 37 (hg19) in gBrowse)