ADHDgene Database

SNP Report

Basic Info

Name	rs6505162 dbSNP Ensembl
Location	Chr17:28444183(Fwd)
Variant Alleles	A/C
Ancestral Allele	C
Functional Annotation	5_prime_UTR_variant; NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant.
Consequence to Transcript	5_prime_UTR_variant(ENST00000585881) NMD_transcript_variant(ENST00000584317; ENST00000475652; ENST00000394826; ENST00000584154) intron_variant(ENST00000584317; ENST00000475652; ENST00000479218; ENST00000583301; ENST00000394826; ENST00000582938; ENST00000540900; ENST00000577289; ENST00000584423; ENST00000247026; ENST00000584154) nc_transcript_variant(ENST00000583301; ENST00000467446; ENST00000582938; ENST00000540900; ENST00000577289; ENST00000362201; ENST00000586878) non_coding_exon_variant(ENST00000467446; ENST00000362201; ENST00000586878) upstream_gene_variant(ENST00000581048; ENST00000580103; ENST00000589608; ENST00000588614)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location
NSRP1	nuclear speckle splicing regulatory protein 1	17q11.2
MIR423	microRNA 423	17q11.2
MIR3184	microRNA 3184	17

SNPs in LD with rs6505162 (count: 6) View in gBrowse (chr17:28444183..28538532 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs11080121	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(1/0/0)	0.931[CHB]; 0.92[JPT]; 0.943[YRI]
rs1979572	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant; synonymous_variant	1(1/0/0)	0.81[CEU]; 0.924[CHB]; 0.85[JPT]
rs1042173	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant	1(0/1/0)	0.81[CEU]; 0.931[CHB]; 0.956[CHD]; 0.886[GIH]; 0.85[JPT]; 0.91[MEX]; 0.803[TSI]; 0.846[YRI]
rs140701	intron_variant; upstream_gene_variant	3(1/2/0)	0.956[CHD]
rs4325622	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(1/0/0)	0.81[CEU]; 0.931[CHB]; 0.85[JPT]
rs3813034	3_prime_UTR_variant; downstream_gene_variant	4(0/4/0)	0.835[ASW]; 0.81[CEU]; 0.931[CHB]; 0.956[CHD]; 0.885[GIH]; 0.85[JPT]; 0.867[MEX]; 0.846[YRI]