ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs37020 dbSNP Ensembl
Location Chr5:1418374(Fwd)
Variant Alleles A/C
Ancestral Allele C
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000513308; ENST00000453492; ENST00000270349)
upstream_gene_variant(ENST00000511750)
No. of Studies 2 (significant: 1; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Shang CY, 2011 G/T G allele FBAT P-value=0.271, Z=1.1 for total sample; G allel...... G allele FBAT P-value=0.271, Z=1.1 for total sample; G allele FBAT P-value=0.038, Z=2.073 for combined subtype; T allele FBAT P-value=0.816, Z=0.232 for inattentive subtype More... no significant associations in the total sample; showed bias...... no significant associations in the total sample; showed biased transmission for ADHD children in combined subtype More... Significant
Genro JP, 2008 G/T P-value=0.937 for total sample; P-value=0.414 for combined s...... P-value=0.937 for total sample; P-value=0.414 for combined sample More... no allele was significantly more transmitted than expected no allele was significantly more transmitted than expected Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs37020 (count: 7) View in gBrowse (chr5:1416142..1438354 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 3)

LD-proxies (count: 4)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014