ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs2456205 dbSNP Ensembl
Location	Chr5:52179458(Fwd)
Variant Alleles	G/T
Ancestral Allele	T
Functional Annotation	downstream_gene_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000509049) intron_variant(ENST00000513737; ENST00000282588) nc_transcript_variant(ENST00000513737)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Laurin N, 2008(a)	G/T		P-value=0.366 in the catergorical analysis, P-value>0.05 in ...... P-value=0.366 in the catergorical analysis, P-value>0.05 in the quantitative analysis More...	no significant evidence of association no significant evidence of association	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
ITGA1	integrin, alpha 1	5q11.1	1(0/1/0)

Genes from other sources (count: 0)

SNPs in LD with rs2456205 (count: 12) View in gBrowse (chr5:52177346..52182593 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 12)

rs_ID	Functional Annotation	r²[population]
rs2456223	intron_variant; nc_transcript_variant	0.939[CEU]; 0.931[CHB]; 0.825[CHD]; 0.821[GIH]; 0.85[TSI]
rs2456202	downstream_gene_variant; intron_variant; nc_transcript_variant	0.939[CEU]; 1.0[CHB]; 0.969[CHD]; 0.891[GIH]; 1.0[JPT]; 0.865[MEX]; 0.963[TSI]
rs2447866	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.939[CEU]; 1.0[CHB]; 1.0[JPT]
rs2456203	downstream_gene_variant; intron_variant; nc_transcript_variant	0.939[CEU]; 1.0[CHB]; 1.0[JPT]
rs2456199	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.936[CEU]; 1.0[CHB]; 0.968[CHD]; 0.92[GIH]; 1.0[JPT]; 0.8[MEX]; 0.924[TSI]
rs2447859	intron_variant; nc_transcript_variant	0.939[CEU]; 1.0[CHB]; 0.969[CHD]; 0.921[GIH]; 1.0[JPT]; 0.866[MEX]; 0.963[TSI]
rs2456206	downstream_gene_variant; intron_variant; nc_transcript_variant	0.939[CEU]; 1.0[CHB]; 0.969[CHD]; 0.921[GIH]; 1.0[JPT]; 0.865[MEX]; 0.963[TSI]
rs2447861	intron_variant; nc_transcript_variant	0.938[CEU]; 1.0[CHB]; 1.0[JPT]
rs2456204	downstream_gene_variant; intron_variant; nc_transcript_variant	0.939[CEU]; 1.0[CHB]; 1.0[JPT]
rs2447863	downstream_gene_variant; intron_variant; nc_transcript_variant	0.939[CEU]; 1.0[CHB]; 1.0[JPT]
rs2447864	downstream_gene_variant; intron_variant; nc_transcript_variant	0.939[CEU]; 1.0[CHB]; 0.969[CHD]; 0.921[GIH]; 1.0[JPT]; 0.807[MEX]; 0.958[TSI]
rs2447865	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.883[CEU]; 1.0[CHB]; 1.0[JPT]