ADHDgene Database

SNP Report

Basic Info

Name	rs10277729 dbSNP Ensembl
Location	Chr12:21106269(Fwd); Chr2:199551733(Fwd); Chr3:105869587(Rev); Chr3:137375274(Fwd); Chr5:180318930(Fwd); Chr9:16225553(Fwd); ChrX:8743218(Fwd)
Variant Alleles	T/C
Functional Annotation	feature_elongation; intron_variant; nc_transcript_variant.
Consequence to Transcript	feature_elongation(ENST00000357468; ENST00000380685; ENST00000380683) intron_variant(ENST00000440609; ENST00000357468; ENST00000380685; ENST00000380683; ENST00000381541; ENST00000553473; ENST00000554957; ENST00000540229) nc_transcript_variant(ENST00000440609)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location
SLCO1B3	solute carrier organic anion transporter family, member 1B3	12p12
SLCO1B7	solute carrier organic anion transporter family, member 1B7 (non-functional)	12p12.2
C9orf92	chromosome 9 open reading frame 92	9

SNPs in LD with rs10277729 (count: 5) View in gBrowse (chr12; 2; 3; 3; 5; 9; X:21106269..34696545 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs10258145	intron_variant; nc_transcript_variant	1(0/1/0)	0.87[CEU]
rs6462569	intron_variant; nc_transcript_variant	1(0/1/0)	0.871[CEU]; 0.836[JPT]; 0.843[YRI]
rs2893482	intron_variant; nc_transcript_variant	1(0/1/0)	0.871[CEU]; 0.836[JPT]
rs1023556	intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.937[CEU]; 0.894[JPT]
rs12690808	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1(0/1/0)	0.871[CEU]; 0.836[JPT]