ADHDgene Database

SNP Report

Basic Info

Name	rs9972882 dbSNP Ensembl
Location	Chr17:37807698(Fwd)
Variant Alleles	A/C
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000578577) intron_variant(ENST00000578254; ENST00000577248; ENST00000578232; ENST00000585214; ENST00000580611; ENST00000544210; ENST00000579479; ENST00000583582; ENST00000394250; ENST00000581894; ENST00000578577; ENST00000580551; ENST00000583718; ENST00000336308) nc_transcript_variant(ENST00000578232; ENST00000578254; ENST00000585214; ENST00000583582; ENST00000580551) upstream_gene_variant(ENST00000580331; ENST00000443521; ENST00000583419; ENST00000460894; ENST00000484773; ENST00000488876; ENST00000582874)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location
STARD3	StAR-related lipid transfer (START) domain containing 3	17q11-q12

SNPs in LD with rs9972882 (count: 5) View in gBrowse (chr17:37781849..37828496 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2952151	3_prime_UTR_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant	1(0/1/0)	0.908[CHB]; 0.875[CHD]; 0.858[GIH]; 0.905[JPT]; 0.973[TSI]
rs879606	downstream_gene_variant; upstream_gene_variant	1(0/1/0)	0.887[ASW]; 0.868[CHB]; 0.832[CHD]; 0.876[GIH]; 0.822[JPT]; 0.911[LWK]; 0.876[MKK]; 0.861[YRI]
rs907094	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.868[CHB]; 0.861[CHD]; 0.822[JPT]
rs1053651	downstream_gene_variant; synonymous_variant; upstream_gene_variant	1(0/1/0)	0.946[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 0.914[MEX]; 0.922[TSI]
rs3764352	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.868[CHB]; 0.861[CHD]; 0.822[JPT]