ADHDgene Database

SNP Report

Basic Info

Name	rs7398705 dbSNP Ensembl
Location	Chr12:112016016(Fwd)
Variant Alleles	A/C
Ancestral Allele	A
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000483311) intron_variant(ENST00000542287; ENST00000392645; ENST00000483311; ENST00000549455; ENST00000535949; ENST00000550104; ENST00000377617; ENST00000389153; ENST00000548492) nc_transcript_variant(ENST00000392645; ENST00000549455) upstream_gene_variant(ENST00000549333; ENST00000423386)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
ATXN2	ataxin 2	12q23-q24.1	1(0/0/1)

SNPs in LD with rs7398705 (count: 1) View in gBrowse (chr12:111974280..112016016 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs616668	NMD_transcript_variant; intron_variant; nc_transcript_variant	1(0/0/1)	1.0[CEU]; 0.954[CHB]; 0.898[CHD]; 1.0[GIH]; 0.887[JPT]; 1.0[TSI]