ADHDgene Database

SNP Report

Basic Info

Name	rs7178379 dbSNP Ensembl
Location	Chr15:55947552(Fwd)
Variant Alleles	G/A
Ancestral Allele	A
Functional Annotation	3_prime_UTR_variant; intron_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000561465) intron_variant(ENST00000389286)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
PRTG	protogenin	15q21.3	1(1/0/0)

SNPs in LD with rs7178379 (count: 6) View in gBrowse (chr15:55943542..56000063 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2414424	intron_variant	1(1/0/0)	0.953[CHB]
rs4774800	intron_variant	1(0/1/0)	1.0[CEU]; 0.908[CHB]; 0.953[JPT]; 0.918[YRI]
rs492363	downstream_gene_variant; intron_variant	1(0/1/0)	0.826[CHB]
rs12438177	intron_variant	1(0/1/0)	0.907[CHB]; 0.952[JPT]
rs11854213	downstream_gene_variant; synonymous_variant; upstream_gene_variant	1(0/1/0)	0.906[CHB]; 0.86[JPT]
rs7162879	downstream_gene_variant; intron_variant	1(1/0/0)	0.955[CHB]