ADHDgene Database

SNP Report

Basic Info

Name	rs4923460 dbSNP Ensembl
Location	Chr11:27656789(Fwd)
Variant Alleles	G/T
Ancestral Allele	G
Functional Annotation	intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000499008; ENST00000530686; ENST00000499568; ENST00000502161; ENST00000500662; ENST00000501176; ENST00000532965) nc_transcript_variant(ENST00000499008; ENST00000499568; ENST00000530686; ENST00000502161; ENST00000500662; ENST00000501176; ENST00000532965) upstream_gene_variant(ENST00000534757; ENST00000527083; ENST00000530313)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location
BDNF-AS1	BDNF antisense RNA 1 (non-protein coding)	11p14.1
LINC00678	long intergenic non-protein coding RNA 678	11p14.1

SNPs in LD with rs4923460 (count: 6) View in gBrowse (chr11:27656789..27749725 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs6265	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; missense_variant; nc_transcript_variant; non_coding_exon_variant	12(3/9/0)	0.941[CEU]; 0.848[JPT]; 0.876[TSI]
rs10767664	intron_variant; nc_transcript_variant; upstream_gene_variant	1(1/0/0)	0.877[CEU]; 0.846[JPT]
rs11030104	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	2(1/1/0)	1.0[CEU]; 0.877[GIH]; 0.848[JPT]; 0.909[TSI]
rs2049045	NMD_transcript_variant; intron_variant; nc_transcript_variant	1(1/0/0)	0.941[CEU]
rs1491850	intron_variant; nc_transcript_variant	1(1/0/0)	0.848[JPT]
rs7103411	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	2(2/0/0)	0.89[CEU]; 0.848[JPT]; 0.855[TSI]