ADHDgene Database

SNP Report

Basic Info

Name	rs3776568 dbSNP Ensembl
Location	Chr5:36632611(Fwd)
Variant Alleles	G/C
Ancestral Allele	G
Functional Annotation	downstream_gene_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000502864; ENST00000513646; ENST00000505202; ENST00000513903) intron_variant(ENST00000514563; ENST00000509272; ENST00000265113; ENST00000427100; ENST00000381918) nc_transcript_variant(ENST00000514563; ENST00000509272)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Turic D, 2005(a)	C/G		no P-value no P-value	no association no association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC1A3	solute carrier family 1 (glial high affinity glutamate transporter), member 3	5p13	2(1/1/0)

SNPs in LD with rs3776568 (count: 8) View in gBrowse (chr5:36618403..36636955 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs3776567	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 0.91[JPT]; 0.926[YRI]
rs432268	intron_variant; nc_transcript_variant	1.0[CHB]; 0.91[JPT]
rs6451304	downstream_gene_variant; intron_variant; nc_transcript_variant	0.863[CHB]; 0.833[JPT]
rs3733810	downstream_gene_variant; intron_variant; nc_transcript_variant	0.869[CHB]; 0.833[JPT]; 0.895[YRI]
rs372171	intron_variant; nc_transcript_variant	1.0[CHB]; 0.916[JPT]
rs3776566	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 0.931[CHB]; 0.91[JPT]; 0.857[YRI]
rs442867	intron_variant; nc_transcript_variant	0.933[CHB]; 0.91[JPT]
rs1030239	intron_variant; nc_transcript_variant	0.863[CHB]; 1.0[JPT]