ADHDgene Database

SNP Report

Basic Info

Name	rs2517956 dbSNP Ensembl
Location	Chr17:37843859(Fwd)
Variant Alleles	G/A
Ancestral Allele	A
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000584620) intron_variant(ENST00000582276; ENST00000584856; ENST00000309862; ENST00000429199; ENST00000378011; ENST00000300658; ENST00000584620; ENST00000579146) nc_transcript_variant(ENST00000582276; ENST00000309862) upstream_gene_variant(ENST00000578199; ENST00000584601; ENST00000584014; ENST00000577337; ENST00000580898; ENST00000406381)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location
PGAP3	post-GPI attachment to proteins 3	17q21.2
ERBB2	v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian)	17q11.2-q12

SNPs in LD with rs2517956 (count: 2) View in gBrowse (chr17:37822311..37843859 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2952151	3_prime_UTR_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant	1(0/1/0)	0.943[ASW]; 0.951[CEU]; 0.87[CHB]; 0.899[CHD]; 0.917[GIH]; 0.953[JPT]; 0.872[MEX]; 0.867[TSI]
rs1053651	downstream_gene_variant; synonymous_variant; upstream_gene_variant	1(0/1/0)	0.858[JPT]