ADHDgene Database

SNP Report

Basic Info

Name	rs2301064 dbSNP Ensembl
Location	Chr5:36675699(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
Functional Annotation	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000514563; ENST00000509272) intron_variant(ENST00000265113; ENST00000381918; ENST00000427100; ENST00000510740; ENST00000505376) nc_transcript_variant(ENST00000510740; ENST00000505376) upstream_gene_variant(ENST00000506178)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Turic D, 2005(a)	C/T		no P-value no P-value	no association no association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC1A3	solute carrier family 1 (glial high affinity glutamate transporter), member 3	5p13	2(1/1/0)

SNPs in LD with rs2301064 (count: 13) View in gBrowse (chr5:36546652..36757707 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs1001571	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs3753180	downstream_gene_variant; intron_variant; nc_transcript_variant	0.8[ASW]; 1.0[CHB]; 1.0[CHD]; 0.885[GIH]; 1.0[JPT]; 1.0[MEX]; 0.826[MKK]; 1.0[TSI]
rs2731919	downstream_gene_variant	1.0[MEX]
rs2731924		1.0[MEX]
rs10053299		1.0[MEX]
rs6860851	upstream_gene_variant	1.0[MEX]
rs16903277	intron_variant; nc_transcript_variant	1.0[MEX]
rs10473036		1.0[MEX]
rs6892871	intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CHB]; 1.0[CHD]; 0.883[GIH]; 0.823[JPT]; 1.0[TSI]
rs2562569		1.0[MEX]
rs36682	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[MEX]
rs10080178	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 0.802[MKK]; 1.0[TSI]
rs9283743		1.0[TSI]