ADHDgene Database

SNP Report

Basic Info

Name	rs2278898 dbSNP Ensembl
Location	Chr8:144691512(Fwd)
Variant Alleles	G/C
Ancestral Allele	G
Functional Annotation	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000447926) downstream_gene_variant(ENST00000524719; ENST00000531473; ENST00000425753; ENST00000528920; ENST00000527677; ENST00000529064; ENST00000533817; ENST00000529048; ENST00000532308) intron_variant(ENST00000495276; ENST00000220966; ENST00000482616; ENST00000447926; ENST00000433751; ENST00000377579) nc_transcript_variant(ENST00000495276; ENST00000482616) upstream_gene_variant(ENST00000462036)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location
PYCRL	pyrroline-5-carboxylate reductase-like	8q24.3
TSTA3	tissue specific transplantation antigen P35B	8q24.3

SNPs in LD with rs2278898 (count: 1) View in gBrowse (chr8:144657600..144691512 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2290416	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; synonymous_variant; upstream_gene_variant	1(0/0/1)	0.896[JPT]