ADHDgene Database

SNP Report

Basic Info

Name	rs1923886 dbSNP Ensembl
Location	Chr13:47423291(Fwd)
Variant Alleles	C/T
Ancestral Allele	T
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000542664; ENST00000543956; ENST00000378688) upstream_gene_variant(ENST00000452352; ENST00000455126; ENST00000430913)
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Oades RD, 2008			P-value=0.033097; FDR P-value=0.16548 for cognitive impulsiv...... P-value=0.033097; FDR P-value=0.16548 for cognitive impulsivity More...	attained nominal significance for an association with cognit...... attained nominal significance for an association with cognitive impulsivity More...	Significant

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
HTR2A	5-hydroxytryptamine (serotonin) receptor 2A	13q14-q21	12(6/6/0)

Approved Symbol	Approved Name	Location
HTR2A-AS1	HTR2A antisense RNA 1 (non-protein coding)	13q14.2

SNPs in LD with rs1923886 (count: 2) View in gBrowse (chr13:47420312..47423291 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs6561333	feature_truncation; intron_variant	2(2/0/0)	0.924[CEU]; 0.916[MEX]; 0.953[TSI]