ADHDgene Database

SNP Report

Basic Info

Name	rs174675 dbSNP Ensembl
Location	Chr22:19934051(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
Functional Annotation	intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000407537; ENST00000403184; ENST00000361682; ENST00000403710; ENST00000467943) nc_transcript_variant(ENST00000467943) upstream_gene_variant(ENST00000400525; ENST00000474308; ENST00000400519; ENST00000400521; ENST00000207636; ENST00000334363; ENST00000406520; ENST00000496729; ENST00000535882; ENST00000412786)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
COMT	catechol-O-methyltransferase	22q11.21	25(5/20/0)

Approved Symbol	Approved Name	Location
TXNRD2	thioredoxin reductase 2	22q11.21

SNPs in LD with rs174675 (count: 2) View in gBrowse (chr22:19931407..19937533 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs5993882	intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.941[ASW]; 0.953[LWK]; 0.905[MKK]; 0.802[TSI]; 0.962[YRI]
rs933271	intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.942[ASW]; 0.951[CEU]; 0.954[CHB]; 0.949[CHD]; 0.977[GIH]; 1.0[JPT]; 1.0[MEX]; 0.909[MKK]; 1.0[TSI]