ADHDgene Database

SNP Report

Basic Info

Name	rs174556 dbSNP Ensembl
Location	Chr11:61580635(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000424501) downstream_gene_variant(ENST00000473263; ENST00000541683; ENST00000410394; ENST00000545986) intron_variant(ENST00000574708; ENST00000540767; ENST00000433932; ENST00000545405; ENST00000448607; ENST00000542506; ENST00000545245; ENST00000424501; ENST00000350997; ENST00000544309; ENST00000466716; ENST00000544696; ENST00000491310; ENST00000539419; ENST00000421879) upstream_gene_variant(ENST00000257261; ENST00000522639; ENST00000522056; ENST00000517839; ENST00000539999; ENST00000496123)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
FADS2	fatty acid desaturase 2	11q12.2	3(3/0/0)
FADS1	fatty acid desaturase 1	11q12-q13.1	3(1/2/0)

Approved Symbol	Approved Name	Location
MIR1908	microRNA 1908	11

SNPs in LD with rs174556 (count: 2) View in gBrowse (chr11:61569306..61580635 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs174548	5_prime_UTR_variant; intron_variant; nc_transcript_variant	1(0/1/0)	1.0[CEU]; 1.0[CHB]; 0.977[CHD]; 1.0[GIH]; 1.0[JPT]; 0.869[MEX]; 0.901[TSI]
rs174545	3_prime_UTR_variant; downstream_gene_variant; intron_variant	1(0/1/0)	1.0[CHB]; 1.0[JPT]; 1.0[YRI]