ADHDgene Database

SNP Report

Basic Info

Name	rs130058 dbSNP Ensembl
Location	Chr6:78173281(Fwd)
Variant Alleles	T/A
Ancestral Allele	T
Functional Annotation	5_prime_UTR_variant.
Consequence to Transcript	5_prime_UTR_variant(ENST00000369947)
No. of Studies	2 (significant: 0; non-significant: 2; trend: 0)
Source	Literature-origin

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Ickowicz A, 2007	T/A	T	TDT P-value=0.228 TDT P-value=0.228	No evidence for biased transmission No evidence for biased transmission	Non-significant
Smoller JW, 2006	A/T		allelic P-value=0.24 in inattentive; allelic P-value=1 in AD...... allelic P-value=0.24 in inattentive; allelic P-value=1 in ADHD; allelic P-value=0.82 in combined More...	displayed no significant association displayed no significant association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
HTR1B	5-hydroxytryptamine (serotonin) receptor 1B	6q13	13(5/8/0)

SNPs in LD with rs130058 (count: 7) View in gBrowse (chr6:78170062..78198081 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.


rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]
rs11568817	5_prime_UTR_variant	1(0/1/0)	0.824[JPT]