SNP Report
Basic Info
Name |
rs12419334
dbSNP
Ensembl
|
Location |
Chr11:71139472(Fwd) |
Variant Alleles |
T/C |
Ancestral Allele |
C |
Functional Annotation |
3_prime_UTR_variant.
|
Consequence to Transcript |
3_prime_UTR_variant(ENST00000534795) |
No. of Studies |
0 (significant: 0; non-significant: 0; trend: 0) |
Source |
LD-proxy
|
SNP related studies (count: 0)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 8)
|
rs_ID |
Functional Annotation |
#studies(significant/non-significant/trend) |
r2[population] |
rs1790324
|
downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/0/1)
|
0.838[TSI]
|
rs12422045
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
1(0/0/1)
|
1.0[CEU]; 0.907[CHB]; 0.951[CHD]; 0.959[GIH]; 0.892[JPT]; 1.0[MEX]; 1.0[TSI]
|
rs12800438
|
NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant |
1(0/0/1)
|
0.947[CEU]; 0.952[CHB]; 0.975[CHD]; 1.0[GIH]; 0.892[JPT]; 0.936[TSI]
|
rs736894
|
downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/0/1)
|
0.838[TSI]
|
rs7928249
|
intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/0/1)
|
0.947[CEU]; 1.0[CHB]; 0.975[CHD]; 1.0[GIH]; 0.892[JPT]; 0.913[MEX]; 0.902[TSI]
|
rs11603330
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
1(0/0/1)
|
1.0[CEU]; 0.907[CHB]; 0.951[CHD]; 0.959[GIH]; 0.892[JPT]; 1.0[MEX]; 1.0[TSI]
|
rs3750997
|
5_prime_UTR_variant; intron_variant; upstream_gene_variant |
1(0/0/1)
|
1.0[CEU]; 0.959[GIH]; 0.803[MEX]; 0.967[TSI]
|
rs1630498
|
downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/0/1)
|
0.838[TSI]
|
LD-proxies (count: 0)