ADHDgene Database

SNP Report

Basic Info

Name	rs11101684 dbSNP Ensembl
Location	Chr10:135111870(Fwd)
Variant Alleles	T/C
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000482278) downstream_gene_variant(ENST00000470829; ENST00000480198) intron_variant(ENST00000482278; ENST00000252936; ENST00000417178; ENST00000487796; ENST00000368563; ENST00000543663) nc_transcript_variant(ENST00000487796) upstream_gene_variant(ENST00000424450)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location
TUBGCP2	tubulin, gamma complex associated protein 2	10q26.3

SNPs in LD with rs11101684 (count: 4) View in gBrowse (chr10:135111870..135160950 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs12244716	downstream_gene_variant; intron_variant; upstream_gene_variant	1(0/1/0)	0.877[JPT]
rs11101694	intron_variant	1(0/1/0)	0.823[CHB]
rs2298122	intron_variant; upstream_gene_variant	1(0/1/0)	1.0[CEU]; 1.0[CHB]
rs4838721	intron_variant; nc_transcript_variant; upstream_gene_variant	1(1/0/0)	1.0[CEU]; 0.823[CHB]