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- Data Summary
Gene Report
Approved Symbol | LPCAT1 |
---|---|
Previous Symbol | AYTL2 |
Symbol Alias | FLJ12443 |
Approved Name | lysophosphatidylcholine acyltransferase 1 |
Previous Name | acyltransferase like 2 |
Location | 5p15.33 |
Position | chr5:1456595-1524092, - |
External Links |
HGNC: 25718 Entrez Gene: 79888 Ensembl: ENSG00000153395 UCSC: uc003jcm.2 |
No. of Studies | 0 (significant: 0; non-significant: 0; trend: 0) |
Source | Mapped by LD-proxy |
Literature-origin SNPs (count: 0)
LD-proxies (count: 17)
rs_ID | Location | Functional Annotation |
---|---|---|
rs12654851 | Chr5:1454004(Fwd) | downstream_gene_variant |
rs9728 | Chr5:1462098(Fwd) | 3_prime_UTR_variant; NMD_transcript_variant; nc_transcript_variant; non_coding_exon_variant |
rs2292023 | Chr5:1461389(Fwd) | 3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant |
rs11750173 | Chr5:1460131(Fwd) | NMD_transcript_variant; downstream_gene_variant; intron_variant |
rs2277006 | Chr5:1466919(Fwd) | NMD_transcript_variant; nc_transcript_variant; non_coding_exon_variant; synonymous_variant |
rs2963282 | Chr5:1512208(Fwd) | NMD_transcript_variant; intron_variant; nc_transcript_variant |
rs2962041 | Chr5:1511222(Fwd) | NMD_transcript_variant; intron_variant; nc_transcript_variant |
rs17588991 | Chr5:1501695(Fwd) | NMD_transcript_variant; nc_transcript_variant; non_coding_exon_variant; synonymous_variant |
rs2937652 | Chr5:1460132(Fwd) | NMD_transcript_variant; downstream_gene_variant; intron_variant |
rs11133792 | Chr5:1477231(Fwd) | NMD_transcript_variant; downstream_gene_variant; intron_variant |
rs4608970 | Chr5:1519197(Fwd) | NMD_transcript_variant; intron_variant; nc_transcript_variant |
rs27056 | Chr5:1473977(Fwd) | NMD_transcript_variant; intron_variant |
rs31491 | Chr5:1477310(Fwd) | NMD_transcript_variant; downstream_gene_variant; intron_variant |
rs27052 | Chr5:1470069(Fwd) | NMD_transcript_variant; intron_variant; upstream_gene_variant |
rs27053 | Chr5:1470578(Fwd) | NMD_transcript_variant; intron_variant; upstream_gene_variant |
rs2078247 | Chr5:1452280(Fwd) | downstream_gene_variant |
rs8352 | Chr5:1463051(Fwd) | 3_prime_UTR_variant; NMD_transcript_variant; nc_transcript_variant; non_coding_exon_variant |
GO terms by PBA (with statistical significance of FDR<0.05) (count: 0)
GO terms by database search (count: 21)
ID | Name | No. of Genes in ADHDgene | Brief Description |
---|---|---|---|
hsa01100 | Metabolic pathways | 237 | |
hsa00564 | Glycerophospholipid metabolism | 22 | |
hsa00565 | Ether lipid metabolism | 15 |
Region: chr5:1456595..1524092 View in gBrowse
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014